diff --git a/inputs/Energies.txt b/inputs/Energies.txt new file mode 100644 index 0000000000000000000000000000000000000000..6adb50da702ca382936e968aaebf9f0b99945022 --- /dev/null +++ b/inputs/Energies.txt @@ -0,0 +1,20 @@ +RIblast ris result +input:primer.fasta,database:/RIblast/test_db,RepeatFlag:0,MaximalSpan:70,MinAccessibleLength:5,MaxSeedLength:20,InteractionEnergyThreshold:-4,HybridEnergyThreshold:-6,FinalThreshold:-8,DropOutLengthWoGap:5,DropOutLengthWGap:16 +Id,Query name, Query Length, Target name, Target Length, Accessibility Energy, Hybridization Energy, Interaction Energy, BasePair +0,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,6.7775,-20.47,-13.6925,(12-31:1543-1527) +1,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,2.50179,-10.96,-8.45821,(24-34:1505-1495) +2,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,11.8919,-24.11,-12.2181,(14-47:1503-1468) +3,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,7.89875,-18.38,-10.4812,(12-30:1500-1472) +4,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,7.87187,-21.18,-13.3081,(12-33:1500-1479) +5,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,6.62624,-18.23,-11.6038,(15-35:1374-1348) +6,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,4.51293,-15.56,-11.0471,(14-31:1362-1348) +7,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence,1577,1.11303,-9.47,-8.35697,(471-479:1227-1219) +8,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,4.94845,-15.74,-10.7916,(16-31:4468-4452) +9,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,5.8201,-15.07,-9.2499,(12-31:4467-4451) +10,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,4.99466,-13.12,-8.12534,(436-448:3979-3967) +11,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,3.37281,-11.59,-8.21719,(161-170:3028-3019) +12,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,4.92998,-13.34,-8.41002,(64-75:2889-2878) +13,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,3.59569,-16.26,-12.6643,(16-31:1933-1914) +14,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,3.51742,-14.39,-10.8726,(16-35:1933-1917) +15,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,7.76528,-19.12,-11.3547,(409-434:223-202) +16,NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence,483,NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly,5428,5.66951,-13.83,-8.16049,(84-97:142-130) diff --git a/inputs/Potential_Priming_sites.txt b/inputs/Potential_Priming_sites.txt new file mode 100644 index 0000000000000000000000000000000000000000..acf80b8c36e6fab02351d952981f1e48178c3db5 --- /dev/null +++ b/inputs/Potential_Priming_sites.txt @@ -0,0 +1,17 @@ +NW_005196756.1:c68260-66684 RIblast Priming Site 1527 1543 0.6037797497538214 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1495 1505 9.325732912247628e-05 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1468 1503 0.05097264781559474 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1472 1500 0.0027711761168916988 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1479 1500 0.316948643004492 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1348 1374 0.018199211376604865 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1348 1362 0.00715661581974023 . . . +NW_005196756.1:c68260-66684 RIblast Priming Site 1219 1227 7.869878373243699e-05 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 4452 4468 0.03578652232345119 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 4451 4467 0.0026988305372181456 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 3967 3979 0.0004096001028030161 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 3019 3028 0.0004777909892392964 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 2878 2889 0.0006601482773674486 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 1914 1933 0.8265542654253801 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 1917 1933 0.04099182778303699 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 202 223 0.09198655085385926 . . . +NC_000012.12:c6970753-6965327 RIblast Priming Site 130 142 0.00043446370764454296 . . . diff --git a/inputs/primer.fasta b/inputs/primer.fasta new file mode 100644 index 0000000000000000000000000000000000000000..f87b26368818404da86843f6ac8bfe415eac0814 --- /dev/null +++ b/inputs/primer.fasta @@ -0,0 +1,8 @@ +>NC_001137.3:100769-101251 Saccharomyces cerevisiae S288C chromosome V, complete sequence +AUGACUGAAUUGUGUCCUGUCUACGCCCCUUUCUUUGGUGCCAUUGGUUGUGCCUCUGCAAUUAUCUUCA +CCUCAUUAGGUGCUGCUUACGGUACUGCUAAGUCUGGUGUUGGUAUCUGUGCCACUUGUGUGUUGAGACC +AGACCUAUUAUUCAAGAACAUUGUUCCUGUUAUUAUGGCUGGUAUCAUUGCCAUUUACGGUUUAGUUGUU +UCCGUUUUGGUUUGUUAUUCGUUGGGUCAAAAGCAAGCUUUGUACACCGGUUUCAUCCAAUUGGGUGCCG +GUCUAUCAGUCGGUUUGAGUGGUCUAGCUGCUGGUUUCGCUAUUGGUAUUGUCGGUGAUGCAGGUGUUAG +AGGUUCCUCUCAACAACCAAGAUUAUUCGUCGGUAUGAUUUUGAUUUUGAUUUUUGCUGAAGUUUUGGGU +CUAUACGGUUUGAUUGUUGCUUUGUUGUUGAACUCCAGGGCUACUCAAGAUGUUGUCUGUUAA \ No newline at end of file diff --git a/inputs/transcript.fasta b/inputs/transcript.fasta new file mode 100644 index 0000000000000000000000000000000000000000..2d25e4e806b11bfdf1e8ebe2417c828ffa94dbc6 --- /dev/null +++ b/inputs/transcript.fasta @@ -0,0 +1,105 @@ +>NW_005196756.1:c68260-66684 Emiliania huxleyi CCMP1516 unplaced genomic scaffold EMIHUscaffold_7, whole genome shotgun sequence +CUGAGCUCUUAGACACCAGGAUCACCAGGAGCGCGACGAGGGCCCUGCGCACACCCAUCCCUCCCCAUCC +CUCCCCUCAGGGUCCCUCCCUCUCUCUGCCGAGAGGGGCGGCCCUCGCCGCUCGCCCCCUCCCGCCAUCG +CGCGUUCCUCGCGUGCGGCGCUCAGCCGCCCCCCGCGCCUGGCGCCCUCUGCACACACGCUCCCCCUCUG +GCUGCGCGCCGCGCGACCAACGGCGCCGGCUGGUGUCGCAGGCAUGCUGUCCUUCCUUCUCACCACCGCG +GCCGCGGUCACCGCCUUUAACGCGCCCGUCGCGGCGCCGAGCAGCAGCUUCGCGCAGCCGCGUGUCGCAG +CCUCGCCUGUGAUGGGUGCCACCAUCCGCGAGCUGCGCGACCGCGUGGGCUCGGUCAAAAACACGAAGAA +AAUCACGUCUGCUAUGCGCCUCGUCGCCGCCGCCAAGGUGCGCCGCGCGCAGGAGGCUUGCCUGCGCUCG +CGCCCCUUCUCGGAGACGCUGGAGCGCAUCCUCGGCGGCCUCCUCCAGCGCCUCUCAACCGAGGCGCUGG +ACAUCCCGCUGCUGCAGCAGCGCGAGGCGAAAAAGGUGGGCCUGUUGGUCAUCACCGGGGACCGCGGCCU +GUGCGGCUCCUACAAUUCUGCCGCCAUCAAGAAGACCGAGGGCCGCAUCGCUGAGCUGAAGGCGCAGGGC +GUUGAGGCCGAGCUCAUCACUGUGGGCAACAAGGGCUCGACCUACUUCAAGCGCCGCUCGGACCCGUCCU +CGCCCCAGUACGCCGCGCCGCUGCGCAAGGCAGUGCCGUGCGGCCAGGCCCCGACCGCCGAGAUGGCGAC +GGAGCUCGCCUCCGAGCUGCUCUCCUCGUACUAUGCCGGCGAGCUCGACCGCGUCGAGCUCAUCUACACC +UCCUUCGUCUCUAUGAUCUCCUCCAUCCCGUCGGUCCGCACGAUGAUCCCGCUCACGCCGCAGGGCAUCG +AGACCGAGGGCGACGAGAUCUUCAAGAUGACCACCAAGGAUGGCGAUUUCGCCAUCGAGAAGGAGAAGGU +GGACAAGGCGGAGCCGCAGCAGUUUGCCGCCGACAUGAUCUUCGAGCAGGAGCCGUCGCAGCUGCUCAAC +GCCAUCCUGCCGCUCUACCUCAACGGCCAGAUCCUGCGCACGCUGCAGGAGUCGGUCGCGUCGGAGCUCG +CGUCGCGCAUGACCGCGAUGCAGUCGGCUACGGACAACGCCAAGGAGCUGCAAAAGACGCUCGAGCUCCA +GAUGAACCGCGCGCGCCAGGCCAAGAUCACCCAGGAGCUGAUGGAGAUCAUCGCGGGCGCGGACUCGGUU +UAGAGGGCUGUGGGAGCAAAAGGGGGGAUGGGGGGCGUGGCGAGGUCGCUUGCCAGUCGUAGCUCUGGGA +GCGACUGACGAUUCUCACAUUGAACUCGAGCGAACUGUCGAUGCUGCGAGCCGCCCGCCGCGCGCGUGAU +CUGGGGGGCGGGGGGGGGUGUGCACGGGAUGGGGGUUGGGGAGAGAGUCGUCGCGGCGGAGGGGCGGCAG +GACACUUUCGCGCGAAAAAUACGUUCGUCCCGUUGAA + + +>NC_000012.12:c6970753-6965327 Homo sapiens chromosome 12, GRCh38.p13 Primary Assembly +UCCGUAUGCGCGAUUCCUGUGCGCGAAGUUCGGGUCCGUAGUGGGCUAAGGGGGAGGGUUUCAAAGGGAG +CGCACUUCCGCUGCCCUUUCUUUCGCCAGCCUUACGGGCCCGAACCCUCGUGUGAAGGGUGCAGUACCUA +AGCCGGAGCGGGGUAGAGGCGGGCCGGCACCCCCUUCUGACCUCCAGUGCCGCCGGCCUCAAGAUCAGAC +AUGGCCCAGAACUUGAAGGACUUGGCGGGACGGCUGCCCGCCGGGCCCCGGGGCAUGGGCACGGCCCUGA +AGCUGUUGCUGGGGGCCGGCGCCGUGGCCUACGGUGUGCGCGAAUCUGUGUUCACCGGUGAGCAACCUCC +GCCUGCUCGCCGGACGCUUCCAGUCCCUCCCCCAAACCCCUUGCCCUGUCCCCGCGCCCCUCCACGGGCC +UAGCAUUUCCUCUGAGCAGCGGCCUGGCCUGAUCACCACCCAUCUCCCCACAGUGGAAGGCGGGCACAGA +GCCAUCUUCUUCAAUCGGAUCGGUGGAGUGCAGCAGGACACUAUCCUGGCCGAGGGCCUUCACUUCAGGU +AAUGGCGGGCAGAGCCUGCUGACCCUGACCUUUCACCCUUGACGCCGACCCAGCAGUGGCUAUAGUCGGA +CGUGCAACAGGAUUCAACGCUGCUCUUUUCCCACCCUCCUCAUCCCUGCCCCUAGGAUAGUGGGUGCUGC +GAGAACCUCCAGCAGCAUACAAACUGUUGUUUUCCAGAGGGACAAGAGAAUCUCUCCUUGUCUGUGGUCG +UGGAGAGGAGCAGGCCAAAAAACGCGUGGUGAGGGGAAACCGGGCAAGGCUAGUGAAACUGCGGCCUUUU +CUUUUUUUUUUUUUGGAGAGGGAGUCUUGCUCUGUCGCCCAGGCUGGAGUGCAGUGGCGCGAUCUCGGCU +CACUGCAACCUCCGCCUCCUGAUUUCAAGCGAUUCUCCUGCCUCAGCCUCACGAGUAGCUGGGAUUACAG +GCGCCCGCCACCACGCCCGGCUAAUUUUUGUAUUUUAGUAGAGACGGGGUUUCACUAUGUAGAUCAAGCU +GGUCUCGAACUCCUGACCUCAAAUGAUCCGCCCGCCUCGGCCUCCCAAAGUGCUGGGAUUACAGGCGUGA +GCCACCGCGCCCGGCCGAAACUGUGGCCUCUUAAUACCUAUCCCUGUCCUCUCCAGGAUCCCUUGGUUCC +AGUACCCCAUUAUCUAUGACAUUCGGGCCAGACCUCGAAAAAUCUCCUCCCCUACAGGCUCCAAAGGUAG +GUCUGAGCACUUGGUAAUCACAUGGCAGGUGGGAUGAUCAAGGUAGCUGGCAAGAAACCCCAGGGGAAUA +UGGUAGUGUCAGGCCUUUAGGCCUCUUUCCACAUCUGCAAGAGCUGUAACAAAAAUACCUGCCUCCUGGG +GUCAAAGCAGCAAAUUCUGAACACACUGUGUUUGCGUGCUUUUUACUGUCUCCUCCCUGACGUGUAUUCA +AUAAGAGUAUUGUUUGUCCCUCGUCUUGUUCACUGCCUAGAUCAAAGCUUUGUUUUAAAGCCUUUUUUUU +CUAACUGCUUGACUUACUAUAUCUACAGUUACAUCCACUAGUACACUCUGUUCUGGAGAAGUUUGUCCCU +AAGCUUGACUAGUUCACCUGUUCUCUCCUUCUAGACCAUACAUAAAAGCCGUGCCUUUGAGUUCCCCAGA +CCUCUUCCUCCUCCCCACCCACGCACACAUAUACACCCUGGGUCAGGUAGCUCACCUGUAACCUGUAAUG +UACUUCUUUGUGCUAUACCUAGUGCAGGUCGCUUAUUCAUUUACUAGACUGGGCCCUGGGAAUAAAAGAU +UCAUUAAACACAAUUCUUGUCCCCCAAGUCCUUACAGGAGACAUGAUUACGGUACAGCACGAAAGCGCCC +ACGUUAGAGGUUGCACAGAGUACAGAGGGGGAAAGAGUAGUCAGCUCUGCUGGUGACGGGGUUUGCAGUU +CAAGGCUUCACAGUGGGUGAGGGUGCAUUUCAGCUGUGCUGCGUCUUGUCUUCCUUGUCAGCCUGAUUAA +CUCUCCUCCCCCCAGGGUAGUGCCAGGCUGUACACCAUUGCACAGGGCAUACAGGGAGGAACAUGAAGGA +GAAAAUGCUUGGGAAAGGGUGUUUGGCCUUGACCAGCCACUGCUGACCUCAAUCUCAGACCUACAGAUGG +UGAAUAUCUCCCUGCGAGUGUUGUCUCGACCCAAUGCUCAGGAGCUUCCUAGCAUGUACCAGCGCCUAGG +GCUGGACUACGAGGAACGAGUGUUGCCGUCCAUUGUCAACGAGGUGCUCAAGAGUGUGGUGGCCAAGUUC +AAUGCCUCACAGCUGAUCACCCAGCGGGCCCAGGUCUGACUCCCACCACCAUCUGCGUGGUGUCAGCCUU +UCCUUCCUAGGCCCAGAGUAUUGGGAAUUAGGAAAGGCAGCUUAUUAGAAAAGCAUUGUCACCCUAGUGC +CAUUUCCACCUAAAAGCUGUGCUAAUUGCCACUGUGAAAUAAGGAGAGCCAGCAUUAGAACUCGAUAGCA +CUCGGUGUUAGGAAGCACAGAGGAAAAUGGCCAAGUCUUGGCUUUUCCUGCACCUCUUCGAGCAGAGAGG +CUUAUGUUACAGGUUUGCCUGACAGGAAGCUAAGGCAGUGCAUGUUGUAUUGAGAGUGAAGGGUUAGGGG +UCGCAACCUUCCUUUCAGCUCCCCAGUCCCCUCAAACCACCCCUCCCUUCCCCUCUUCACCCCUGCCCUC +AGGUAUCCCUGUUGAUCCGCCGGGAGCUGACAGAGAGGGCCAAGGACUUCAGCCUCAUCCUGGAUGAUGU +GGCCAUCACAGAGCUGAGCUUUAGCCGAGAGUACACAGCUGCUGUAGAAGCCAAACAAGUGGGUGAGUCG +CAAGAGCCGUGGGGUGAGGGCUUCUGAGAUGCAGGAGGAGGAAAGACUCCAUGGGUGGGGCUCCUGACCC +AGGACAGGGUCUCCCUGACUCUCUCCCACCACAGCCCAGCAGGAGGCCCAGCGGGCCCAAUUCUUGGUAG +AAAAAGCAAAGCAGGAACAGCGGCAGAAAAUUGUGCAGGCCGAGGGUGAGGCCGAGGCUGCCAAGAUGAU +AUCCUUCUGCUGGAGAGAUCUCAGCCCAGCCCCUAGGGCACCUGAGUUCCCCAUUCUCCUUCAUGGGCAG +GCUGAUGAGACUAAGGCGAAUGCGACUCCGUGCUCUCUGGCCCUUGGCUCCUUGUUGGGGGUGGGGACUA +CAGAUGAGAUCUGAAAUCUUAGUGGUAGUACCUGAGCCAUGACUCCCCACUGUAAGGCCAGAUCAAUAGC +AUUGGUGGCCUUGCCUUCAUUUCUGGUGCUGCCCCUAGUUCCUGGCAGCAGCCUGCAGGGAGGCCCACAG +GUGGGGUCCACGGUAGGGCUGGGCACAAGCCACCUGAGCGCAACCUUGGAUCUGACAGCCCAGAGGAGGA +CUGGAGCAAGGGAGUGUGGUAAGGACAGGGCCAGGGAUUGAGACCUGCCCUUGCGUGUACCUUAACCCUC +CUCACCUUGGAGAAGCACUGAGCAAGAACCCUGGCUACAUCAAACUUCGCAAGAUUCGAGCAGCCCAGAA +UAUCUCCAAGACGGUGAGUGUGUCAGCCCAGCGUCUCUGAUGGGGCUGCCUUGAGAAAGUGCUUUCAGUU +AAGGCACAUUGAGGUGAGGGAAUUCGAACCUUGCUUGUUCCGGUUUCUACUCAGAUUGGCUUCUCUGGCC +GGCGCGGUGGCUCACGCAUGUAAUCCCCGCACUUUGGGAGGCCAAGGUGGGUGGAUCACCUGAGGUCAGG +AGUUCGAGACCAGCCUGGCCAACAUGGUGAAACCCCAUCUCUACUAAAAAUACAAAAGAUAAUGAGCCCG +CUGUGGUGGCGUUUAGCUAUAUUCCCAGCUACGCAGGAGGCUGAGGCAGGAGAAUCACUUGAACCCAGGA +GGCGGAAGUUGCAGUGAGCUGAGAUCAUGCCACUGCACUCCAGCCUGAGCAACAGAGCAAGACUCCGUCU +CAAAAAUAAAUAAAUAAAAAAUUGGCUUCUCCGAUACUCCUCCUGUCAAGAAUGAUUCCUCUGGGUUCCC +UGACCUUUUGUUCUAAUCAUAGCUGCUGCUCAGCGCUCUGGAUCCCUAAGUGCGAGCAGAAACCAUGUGU +UACUCAUUGCUGCACCCCUGCCCUAAUCUGCAUGUGUUCCAUGUUAAGUAGCUGCUGAAUUGCAGGGGUC +GGAAUUGAGGUCUUUGCUUAAUGCAAGCAUCUGUCUUAUUUCCUGCCCUGUAGAUCGCCACAUCACAGAA +UCGUAUCUAUCUCACAGCUGACAACCUUGUGCUGAACCUACAGGAUGAAAGUUUCACCAGGUGAGAGAUG +UGGCCACACUGUGGGGUAUCACCAAGAACGUGGGACCUGAGUCUGGUUGUUUGGGCUCUGGAGCCUGCUA +CAGCUAUUCAUAUGGCUCAGAGACAUUGAACCAAAAUUAGAAAAGGGGGUGGUUGACAGUUUCUAUCUUG +CAUCUCAUAGGAUUGAUUUUAUGAGAUCAAAUAGGAUUAUUCACAUAAAAAGCACUUUAAUUAUAAAGUU +UUCAUCUAACCAAAAAGUGAUGAAAGAUGAUACUCAGUUUUCUUACUCAAGAGCCCUCAAACUCCUCUGG +UGAAUGGAGGGAUGUUAGGAAAGGAGAUGAGAAAUAGCAGUGGCCAUGAGAACAUGCCUCCUCCUUUCAU +GAGCCUGAGAUUCCUGGCUGUCAACCCUGUUUAUCUUUUCUCUUGGGAGCAAAGGAGGGUUCAAAGCUGA +GUGGGGCCUGAAGCUGUCAAUUAACAUGUGCAUUUCUCUUCUCUGUUUCUUGUUCAUCUGGCGAUCUGGC +ACCACAGGGGAAGGUAAGCUGUUGUUGCUUCUGUGGGGUCCUGCAGGCCACCUUCUCCAGUACCCGCCUC +CUACCCUACCCCCUUUCCCACCUCCCCGAAGACAAACCCUCAAUCAGGGUAGGAGGGUCGUAGAGGGAAU +GGCCUAGAGUGUCCUGCCUCUCACAUUUAUGUCCCCUAAUAAUGUCAUUAUCUAUCUUUUUUUUCCUACA +GUGACAGCCUCAUCAAGGGUAAGAAAUGAGCCUAGUCACCAAGAACUCCACCCCCAGAGGAAGUGGAUCU +GCUUCUCCAGUUUUUGAGGAGCCAGCCAGGGGUCCAGCACAGCCCUACCCCGCCCCAGUAUCAUGCGAUG +GUCCCCCACACCGGUUCCCUGAACCCCUCUUGGAUUAAGGAAGACUGAAGACUAGCCCCUUUUCUGGGGA +AUUACUUUCCUCCUCCCUGUGUUAACUGGGGCUGUUGGGGACAGUGCGUGAUUUCUCAGUGAUUUCCUAC +AGUGUUGUUCCCUCCCUCAAGGCUGGGAGGAGAUAAACACCAACCCAGGAAUUCUCAAUAAAUUUUUAUU +ACUUAACCUGAAGUCAAGGCUUCACGUGUUCAUGAACU