From e62a936b8648d4a8946bc648cd3c2d2aa29bea4a Mon Sep 17 00:00:00 2001
From: Mihaela Zavolan <mihaela.zavolan@unibas.ch>
Date: Wed, 24 Nov 2021 11:51:43 +0100
Subject: [PATCH] Use nextflow image in ci.yml
---
.gitlab-ci.yml | 16 ++--------------
1 file changed, 2 insertions(+), 14 deletions(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 28d51c4..1b31b31 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -1,17 +1,14 @@
-image: python:3.9-slim-buster
-
stages:
- qc
- test
qc_1:
stage: qc
-
+ image: python:3.9-slim-buster
before_script:
- pip install -r requirements.txt
- pip install -r requirements_dev.txt
- pip install -e .
-
script:
- flake8 src/ setup.py
- coverage run --source src/ -m pytest
@@ -20,16 +17,7 @@ qc_1:
test_1:
stage: test
-
- before_script:
- - pip install -r requirements.txt
- - pip install -r requirements_dev.txt
- - pip install -e .
- - apt update -y
- - apt install wget -y
- - wget -qO- https://get.nextflow.io | bash
- - nextflow self-update
-
+ image: nextflow/nexflow:21.10.3
script:
- nextflow main.nf
--
GitLab