From ec7f686cdc24f87d2905c76ec57e4e8c5a3b30dd Mon Sep 17 00:00:00 2001
From: Melvin Alappat <melvin.alappat@unibas.ch>
Date: Mon, 3 Jan 2022 15:36:45 +0100
Subject: [PATCH] adjusted test file
---
tests/test_priming_prob.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/tests/test_priming_prob.py b/tests/test_priming_prob.py
index ad351ad..2be04d6 100644
--- a/tests/test_priming_prob.py
+++ b/tests/test_priming_prob.py
@@ -1,6 +1,6 @@
"""Unit tests for module ``PrimingProb_CI``."""
import os
-from src.primingprob.priming_prob import Probability as Pbt
+from src.primingprob.priming_prob import inter_para, inter_prob
Energy_file = "./tests/resources/Energies_test.txt"
Fasta_file = "./tests/resources/transcript.fasta"
@@ -9,7 +9,7 @@ Output_file = "./tests/resources/Potential_Priming_Sites.txt"
def test_inter_para():
"""Tests InterPara function."""
- testdata = Pbt.inter_para(Energy_file)
+ testdata = inter_para(Energy_file)
assert len(testdata) == 3 # Number of interactions
assert type(testdata) is list
for i in range(0, len(testdata)):
@@ -23,7 +23,7 @@ testdata2 = test_inter_para()
def test_inter_prob():
"""Tests InterProb function."""
- Pbt.inter_prob(testdata2, Fasta_file, Output_file)
+ inter_prob(testdata2, Fasta_file, Output_file)
assert os.path.exists(Output_file) is True # Check whether file exists
mytestfile = open(Output_file, "r") # Test whether gff file start with transcript ID
--
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