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Update Transcript sequence extractor
authored
Sep 13, 2023
by
Mate Balajti
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branches: Master and review, CJ deleted branch
`revert-f9360ffe`
as it only undid some formatting in the README, presumably as an exercise
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suggestions from the review branch seem to have been incorporated
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two parts: gtf-processing and sequence_extractor; in between there should be a call to bedtools, which is apparently missing
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Combined the two parts into selectable mode for CLI (Máté)
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Added (minimal) testing and updated CI, added arg to select length of polyA tail (100-250?) Should it be random? (Máté)
## [4_Priming site predictor](https://git.scicore.unibas.ch/zavolan_group/tools/priming-site-predictor)
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License: MIT
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