Update Transcript sampler authored by Mate Balajti's avatar Mate Balajti
...@@ -22,9 +22,9 @@ ...@@ -22,9 +22,9 @@
## [Transcript sampler](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-sampler) ## [Transcript sampler](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-sampler)
* License: MIT * License: MIT
* Rebased and merged `hugo.gillet-main-patch-48646` into main * Rebased and merged `hugo.gillet-main-patch-48646` into main
* Branches: `main`, `review`, `Test_environment` = closed merge request for now, merge later, `add_ci_config` = CI workflow will be added after tool works, `dev` = for development * Branches: `main`, `review`, `Test_environment` = merged into dev, `add_ci_config` = CI workflow will be added after tool works, `dev` = for development
* Refactored code for all scripts, removed typos (couldn't stand it) * Refactored code for all scripts, removed typos (couldn't stand it)
* All modules are incorporated into main `transcript_sampler.py` (can the rest be deleted?) * 3 main modules: find-representative-transcript, match-repr-trans-with-exp-lvl and poisson-sampling. All modules are incorporated into main `transcript_sampler.py`
* There is an issue with one of the packages ([link](https://github.com/openvax/gtfparse/issues/36) that is breaking the whole tool, fixed it locally and tool runs now * There is an issue with one of the packages ([link](https://github.com/openvax/gtfparse/issues/36) that is breaking the whole tool, fixed it locally and tool runs now
## [Transcript structure generator](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-structure-generator) ## [Transcript structure generator](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-structure-generator)
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