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Update Transcript structure generator
authored
Sep 04, 2023
by
Mate Balajti
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License: MIT
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Branch ´andri.fraenkl-main-patch-95359´ was refactored, CI cleaned up and merged into
`main`
, two branches remain:
`main`
and
`review`
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No open issues, review MR has 32 unresolved threads, but most seem to be incorporated
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Tool and CI works, CLI and arguments are available,
`setup.py`
is missing
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There is a conda env for the tool
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Docker image available
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Tool and CI works, CLI and arguments are available,
`setup.py`
is missing - there is
`pyproject.toml`
though,
`setup.py`
was added (Máté)
*
There is a conda env for the tool - replaced by general conda env for all the tools (Máté)
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Only "samples" (why sampling? it should generate) transcripts that have Transcript Support Level = 1 (Is this expected behaviour?) (Máté)
## [3_Transcript sequence extractor](https://git.scicore.unibas.ch/zavolan_group/tools/transcript-sequence-extractor)
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License: MIT
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