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    392b04d2
    Fix Poly(A)-trimming rule · 392b04d2
    BIOPZ-Katsantoni Maria authored and Alex Kanitz's avatar Alex Kanitz committed
    In labkey_to_snakemake.py fixed the parameters so that there is 3p as well 5p polya
    feature for every mate, which can be matched to the -a -g -A and -G options of cutadapt
    depending on which is the sense or antisense mate the appropriate variable is populated
    and the rest of variables are filled with 'XXXXXXXXXXXX' which leads to no trimming by
    cutadapt. The poly-A trimming rules are fixed to contain all -a -g -A -G options.
    392b04d2
    History
    Fix Poly(A)-trimming rule
    BIOPZ-Katsantoni Maria authored and Alex Kanitz's avatar Alex Kanitz committed
    In labkey_to_snakemake.py fixed the parameters so that there is 3p as well 5p polya
    feature for every mate, which can be matched to the -a -g -A and -G options of cutadapt
    depending on which is the sense or antisense mate the appropriate variable is populated
    and the rest of variables are filled with 'XXXXXXXXXXXX' which leads to no trimming by
    cutadapt. The poly-A trimming rules are fixed to contain all -a -g -A -G options.