prepare_inputs.dict.tsv 1.49 KiB
labkey snakemake
Entry_Date entry_date
Path_Fastq_Files fastq_path
Condition_Name condition
Sample_Name sample_name
Single_Paired seqmode
Mate1_File fq1
Mate2_File fq2
Mate1_Direction mate1_direction
Mate2_Direction mate2_direction
Mate1_5p_Adapter fq1_5p
Mate1_3p_Adapter fq1_3p
Mate2_5p_Adapter fq2_5p
Mate2_3p_Adapter fq2_3p
Fragment_Length_Mean mean
Fragment_Length_SD sd
Quality_Control_Flag quality_control_flag
Checksum_Raw_FASTQ_Mate1 mate1_checksum
Checksum_Raw_FASTQ_Mate2 mate2_checksum
File_Name_Metadata_File metadata
Name_Quality_Control_File_Mate1 mate1_quality
Name_Quality_Control_File_Mate2 mate2_quality
Organism organism
TaxonID taxon_id
Strain_Isolate_Breed_Ecotype strain_name
Strain_Isolate_Breed_Ecotype_ID strain_id
Biomaterial_Provider biomaterial_provider
Source_Tissue_Name source_name
Tissue_Code tissue_code
Additional_Tissue_Description tissue_description
Genotype_Short_Name genotype_name
Genotype_Description genotype_description
Disease_Short_Name disease_name
Disease_Description disease_description
Treatment_Short_Name treatment
Treatment_Description treatment_description
Gender gender
Age age
Developmental_Stage development_stage
Passage_Number passage_number
Sample_Preparation_Date sample_prep_date
Prepared_By prepared_by
Documentation documentation
Protocol_File protocol_file
Sequencing_Date seq_date
Sequencing_Instrument seq_instrument
Library_preparation_kit library_kit
Cycles cycles
Molecule molecule
Contaminant_Sequences contaminant_seqs
BioAnalyzer_File bioanalyser_file