diff --git a/snakemake/Snakefile b/snakemake/Snakefile index 79bb791f183395da2678284be217998b7665f795..7ce6a46c1de4ec86e6ad6b9a4b010ff377a6138e 100644 --- a/snakemake/Snakefile +++ b/snakemake/Snakefile @@ -156,7 +156,6 @@ rule generate_alfa_index: -p {threads} \ -o {params.out_dir} &> {log}" -# TODO: test with chr21.bam # add singularity-args to this chr21.bam path rule star_rpm_stranded: ''' Create stranded bedgraph coverage with STARs RPM normalisation ''' @@ -188,7 +187,6 @@ rule star_rpm_stranded: --outFileNamePrefix {params.filenameprefix}) &> {log} """ -# TODO: test with chr21.bam rule run_alfa_bg_stranded: ''' Run ALFA from stranded bedgraph files ''' input: