From 1d39fe8f97167416d6557cd87c70b60f7e10a8f5 Mon Sep 17 00:00:00 2001
From: burri0000 <dominik.burri@unibas.ch>
Date: Fri, 24 Jan 2020 14:53:03 +0100
Subject: [PATCH] remove todo statements
---
snakemake/Snakefile | 2 --
1 file changed, 2 deletions(-)
diff --git a/snakemake/Snakefile b/snakemake/Snakefile
index 79bb791..7ce6a46 100644
--- a/snakemake/Snakefile
+++ b/snakemake/Snakefile
@@ -156,7 +156,6 @@ rule generate_alfa_index:
-p {threads} \
-o {params.out_dir} &> {log}"
-# TODO: test with chr21.bam
# add singularity-args to this chr21.bam path
rule star_rpm_stranded:
''' Create stranded bedgraph coverage with STARs RPM normalisation '''
@@ -188,7 +187,6 @@ rule star_rpm_stranded:
--outFileNamePrefix {params.filenameprefix}) &> {log}
"""
-# TODO: test with chr21.bam
rule run_alfa_bg_stranded:
''' Run ALFA from stranded bedgraph files '''
input:
--
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