From 219529007df12ed4ab0e4ab6351785b32c46f788 Mon Sep 17 00:00:00 2001 From: burri0000 <dominik.burri@unibas.ch> Date: Fri, 24 Jan 2020 17:36:34 +0100 Subject: [PATCH] corrected stranded ALFA for rev. seq data --- snakemake/Snakefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/snakemake/Snakefile b/snakemake/Snakefile index 4137bb8..db1b973 100644 --- a/snakemake/Snakefile +++ b/snakemake/Snakefile @@ -211,8 +211,8 @@ rule run_alfa_bg_stranded: shell: """ cd {params.out_dir}; \ - cp {params.in_file_str1} {params.rename_str1}; \ - cp {params.in_file_str2} {params.rename_str2}; \ + cp {params.in_file_str1} {params.rename_str2}; \ + cp {params.in_file_str2} {params.rename_str1}; \ alfa -g {params.genome_index} \ --bedgraph {params.rename_str1} {params.rename_str2} {params.name} \ -s {params.stranded} &> {log}; \ -- GitLab