diff --git a/workflow/Snakefile b/workflow/Snakefile index d42655022fb2934773e2e1e34f2ea1b9474538e5..a0ec1ace382c62aaa766b5b7eb0009d60c196037 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -1593,52 +1593,6 @@ rule alfa_qc: {params.additional_params}) \ &> {log}" -# current_rule = 'rename_alfa_folders' -# rule rename_alfa_folders: -# input: -# tables = lambda wildcards: -# expand( -# os.path.join( -# config["output_dir"], -# "samples", -# "{sample}", -# "ALFA", -# alfa_dict["{renamed_unique}"]), -# sample=wildcards.sample, -# renamed_unique=alfa_dict.keys() -# ), -# output: -# tables = directory( -# os.path.join( -# config["output_dir"], -# "samples", -# "{sample}", -# "ALFA", -# "{renamed_unique}", -# ) -# ) -# params: -# cluster_log_path = config["cluster_log_dir"] - -# log: -# stderr = os.path.join( -# config["log_dir"], -# "samples", -# "{sample}", -# current_rule + "_{renamed_unique}.stderr.log"), -# stdout = os.path.join( -# config["log_dir"], -# "samples", -# "{sample}", -# current_rule + "_{renamed_unique}.stdout.log") - -# singularity: -# "docker://ubuntu:focal-20210416" - -# shell: -# "(cp -r {input.tables} {output.tables};) \ -# 1>{log.stdout} 2>{log.stderr}" - current_rule = 'prepare_multiqc_config' rule prepare_multiqc_config: