From 24ea4e52c8e8a574e3440a611df8576c27d41568 Mon Sep 17 00:00:00 2001
From: Maria Katsantoni <mariakatsantoni@Marias-iMac.local>
Date: Tue, 24 Aug 2021 16:25:00 +0200
Subject: [PATCH] removed redundant newly introduced rule
---
workflow/Snakefile | 46 ----------------------------------------------
1 file changed, 46 deletions(-)
diff --git a/workflow/Snakefile b/workflow/Snakefile
index d426550..a0ec1ac 100644
--- a/workflow/Snakefile
+++ b/workflow/Snakefile
@@ -1593,52 +1593,6 @@ rule alfa_qc:
{params.additional_params}) \
&> {log}"
-# current_rule = 'rename_alfa_folders'
-# rule rename_alfa_folders:
-# input:
-# tables = lambda wildcards:
-# expand(
-# os.path.join(
-# config["output_dir"],
-# "samples",
-# "{sample}",
-# "ALFA",
-# alfa_dict["{renamed_unique}"]),
-# sample=wildcards.sample,
-# renamed_unique=alfa_dict.keys()
-# ),
-# output:
-# tables = directory(
-# os.path.join(
-# config["output_dir"],
-# "samples",
-# "{sample}",
-# "ALFA",
-# "{renamed_unique}",
-# )
-# )
-# params:
-# cluster_log_path = config["cluster_log_dir"]
-
-# log:
-# stderr = os.path.join(
-# config["log_dir"],
-# "samples",
-# "{sample}",
-# current_rule + "_{renamed_unique}.stderr.log"),
-# stdout = os.path.join(
-# config["log_dir"],
-# "samples",
-# "{sample}",
-# current_rule + "_{renamed_unique}.stdout.log")
-
-# singularity:
-# "docker://ubuntu:focal-20210416"
-
-# shell:
-# "(cp -r {input.tables} {output.tables};) \
-# 1>{log.stdout} 2>{log.stderr}"
-
current_rule = 'prepare_multiqc_config'
rule prepare_multiqc_config:
--
GitLab