diff --git a/Snakefile b/Snakefile index 588af362097f71867e5eb2bde8dff4d1cb6c1097..64c346a1a605250a26ebd9687c41aaedc9b5ab1f 100644 --- a/Snakefile +++ b/Snakefile @@ -1072,7 +1072,7 @@ rule pca_salmon: threads: 1 singularity: - "docker://zavolab/zpca:0.8" + "docker://zavolab/zpca:0.8.3-1" shell: "(zpca-tpm \ @@ -1118,7 +1118,7 @@ rule pca_kallisto: threads: 1 singularity: - "docker://zavolab/zpca:0.8" + "docker://zavolab/zpca:0.8.3-1" shell: "(zpca-tpm \ @@ -1630,7 +1630,7 @@ rule multiqc_report: current_rule + ".stdout.log") singularity: - "docker://zavolab/multiqc-plugins:1.0.0" + "docker://zavolab/multiqc-plugins:1.2.1" shell: "(multiqc \ diff --git a/workflow/scripts/zarp_multiqc_config.py b/workflow/scripts/zarp_multiqc_config.py index 40a469eff291823d7db3edb2ffdd7d9f8d6e0d94..a78201c398eeac12c99e348fe81e6183260e693d 100644 --- a/workflow/scripts/zarp_multiqc_config.py +++ b/workflow/scripts/zarp_multiqc_config.py @@ -125,6 +125,26 @@ module_order: path_filters: - "*/*/*genome_quantification_kallisto*.stderr.log" + - zpca: + name: "zpca: salmon | gene expression" + path_filters: + - "*/zpca/pca_salmon_genes/*" + + - zpca: + name: "zpca: salmon | transcript expression" + path_filters: + - "*/zpca/pca_salmon_transcripts/*" + + - zpca: + name: "zpca: kallisto | gene expression" + path_filters: + - "*/zpca/pca_kallisto_genes/*" + + - zpca: + name: "zpca: kallisto | transcript expression" + path_filters: + - "*/zpca/pca_kallisto_transcripts/*" + fn_clean_exts: - '.fq1' - '.gz'