From 374a23eae6b0c08f37c5985c7d1c31885abefa18 Mon Sep 17 00:00:00 2001 From: Maria Katsantoni <maria.katsadoni@gmail.com> Date: Fri, 27 Aug 2021 16:17:20 +0200 Subject: [PATCH] test inserting logo in readme --- README.md | 14 ++++++- images/zarp_logo.svg | 91 ++++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 104 insertions(+), 1 deletion(-) create mode 100644 images/zarp_logo.svg diff --git a/README.md b/README.md index 3125a56..a33fee3 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,16 @@ -# ZARP +> ![zarp_logo][zarp-logo] + +**ZARP** ([Zavolan-Lab][zavolan-lab] Automated RNA-Seq Pipeline) is a generic RNA-Seq analysis pipeline that allows users to process and analyze Illumina short-read sequencing libraries with minimum effort. The pipeline relies on publicly available bioinformatics tools and currently handles single or paired-end stranded bulk RNA-seq data. The workflow is developed in [Snakemake][snakemake], a widely used workflow management system in the bioinformatics community. + + + +Currently ZARP supports: +- adapter-trimming +- read alignment +- genome / transcriptome quantification +- principal component analysis of all the samples included in the analysis +- topology analysis + [Snakemake][snakemake] workflow that covers common steps of short read RNA-Seq library analysis developed by the [Zavolan lab][zavolan-lab]. diff --git a/images/zarp_logo.svg b/images/zarp_logo.svg new file mode 100644 index 0000000..5fb2d84 --- /dev/null +++ b/images/zarp_logo.svg @@ -0,0 +1,91 @@ +<?xml version="1.0" encoding="UTF-8" standalone="no"?> +<!-- Created with Inkscape (http://www.inkscape.org/) --> + +<svg + xmlns:dc="http://purl.org/dc/elements/1.1/" + xmlns:cc="http://creativecommons.org/ns#" + xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" + xmlns:svg="http://www.w3.org/2000/svg" + xmlns="http://www.w3.org/2000/svg" + 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