From 595f881ed9a1d4502ec6ad224f7ab1a31fae69ed Mon Sep 17 00:00:00 2001
From: "anastasiya.boersch@unibas.ch" <anastasiya.boersch@unibas.ch>
Date: Thu, 18 Jun 2020 09:25:24 +0200
Subject: [PATCH] Increase memory for salmon index
---
tests/input_files/cluster.json | 12 +++++++++---
1 file changed, 9 insertions(+), 3 deletions(-)
diff --git a/tests/input_files/cluster.json b/tests/input_files/cluster.json
index 9ac6455..12e9b99 100644
--- a/tests/input_files/cluster.json
+++ b/tests/input_files/cluster.json
@@ -4,7 +4,7 @@
"queue": "6hours",
"time": "01:00:00",
"threads": "1",
- "mem": "8G",
+ "mem": "4G",
"name": "{rule}.{wildcards}",
"out": "logs/cluster/{rule}.{wildcards}-%j-%N.out"
},
@@ -39,6 +39,12 @@
"mem":"10G"
},
"create_index_salmon":
+ {
+ "time": "03:00:00",
+ "threads":"8",
+ "mem":"40G"
+ },
+ "sort_bed_4_big":
{
"time": "03:00:00",
"threads":"8",
@@ -168,13 +174,13 @@
{
"time": "03:00:00",
"threads":"6",
- "mem":"10G"
+ "mem":"20G"
},
"quantification_salmon":
{
"time": "03:00:00",
"threads":"6",
- "mem":"10G"
+ "mem":"20G"
},
"pe_genome_quantification_kallisto":
{
--
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