diff --git a/tests/test_alfa/test.sh b/tests/test_alfa/test.sh index 1472685c50f4765111ce109a8da5363cae63ebef..5e417f4b8b3cce6444bcdbca2225f29c6b4597f1 100755 --- a/tests/test_alfa/test.sh +++ b/tests/test_alfa/test.sh @@ -33,6 +33,7 @@ snakemake \ --use-singularity \ --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \ --verbose \ + --notemp \ results/ALFA/ALFA_plots_mqc.png # Check md5 sum of some output files diff --git a/tests/test_create_dag_image/test.sh b/tests/test_create_dag_image/test.sh index afd8de4c0c0ca2cb86c3773c68477729a5395b37..c5fc8dd8c7fcb3e7f230ef81ca437333a4540add 100755 --- a/tests/test_create_dag_image/test.sh +++ b/tests/test_create_dag_image/test.sh @@ -26,5 +26,6 @@ snakemake \ --printshellcmds \ --dryrun \ --verbose \ + --notemp \ | dot -Tsvg > "../../images/dag_test_workflow.svg" diff --git a/tests/test_create_rule_graph/test.sh b/tests/test_create_rule_graph/test.sh index 51e538324c23a9514093427d7cd4db1a6a7123b2..2fa3db75f436a96902ff617ddb144920d13fe5e6 100755 --- a/tests/test_create_rule_graph/test.sh +++ b/tests/test_create_rule_graph/test.sh @@ -26,5 +26,6 @@ snakemake \ --printshellcmds \ --dryrun \ --verbose \ + --notemp \ | dot -Tsvg > "../../images/rule_graph.svg" diff --git a/tests/test_integration_workflow/test.local.sh b/tests/test_integration_workflow/test.local.sh index 883424d61a180e858d2b6b3372574acfbe3fad1f..00f6d964b053fb2506116de7c1c19d5014567392 100755 --- a/tests/test_integration_workflow/test.local.sh +++ b/tests/test_integration_workflow/test.local.sh @@ -33,6 +33,7 @@ snakemake \ --rerun-incomplete \ --use-singularity \ --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \ + --notemp \ --verbose # Create a Snakemake report after the workflow execution diff --git a/tests/test_integration_workflow/test.slurm.sh b/tests/test_integration_workflow/test.slurm.sh index 0145ae7b1dc412699c59fd6adae31a83f1d08503..02aaf7229c1c0d8c5f0330d1e733840ed1d5f220 100755 --- a/tests/test_integration_workflow/test.slurm.sh +++ b/tests/test_integration_workflow/test.slurm.sh @@ -35,6 +35,7 @@ snakemake \ --rerun-incomplete \ --use-singularity \ --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \ + --notemp \ --verbose # Create a Snakemake report after the workflow execution diff --git a/tests/test_integration_workflow_multiple_lanes/test.local.sh b/tests/test_integration_workflow_multiple_lanes/test.local.sh index 018b47dba928ddd76de92c12645db6c47e951f12..9804f337de0760003d0acbd048f5f680157b9cd1 100755 --- a/tests/test_integration_workflow_multiple_lanes/test.local.sh +++ b/tests/test_integration_workflow_multiple_lanes/test.local.sh @@ -33,6 +33,7 @@ snakemake \ --rerun-incomplete \ --use-singularity \ --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \ + --notemp \ --verbose # Create a Snakemake report after the workflow execution diff --git a/tests/test_integration_workflow_multiple_lanes/test.slurm.sh b/tests/test_integration_workflow_multiple_lanes/test.slurm.sh index f2dd45936dde9abd5570ed98b4fac4991a23509c..a0517fddf6d6815d954bebce7b01e385b9b2073a 100755 --- a/tests/test_integration_workflow_multiple_lanes/test.slurm.sh +++ b/tests/test_integration_workflow_multiple_lanes/test.slurm.sh @@ -35,6 +35,7 @@ snakemake \ --rerun-incomplete \ --use-singularity \ --singularity-args="--bind ${PWD}/../input_files,${PWD}/../../images" \ + --notemp \ --verbose # Create a Snakemake report after the workflow execution