From 5d5f4325ba15387043b817759bff81ec8990133d Mon Sep 17 00:00:00 2001
From: Maciej Bak <maciej.bak@unibas.ch>
Date: Fri, 20 Nov 2020 11:31:34 +0100
Subject: [PATCH] build: adjust multiqc config preparation
---
workflow/scripts/zarp_multiqc_config.py | 16 +++++-----------
1 file changed, 5 insertions(+), 11 deletions(-)
diff --git a/workflow/scripts/zarp_multiqc_config.py b/workflow/scripts/zarp_multiqc_config.py
index 68d2d6c..0b72f85 100644
--- a/workflow/scripts/zarp_multiqc_config.py
+++ b/workflow/scripts/zarp_multiqc_config.py
@@ -89,7 +89,7 @@ report_header_info:
- Analysis Author: "{author_name}"
- Contact E-mail: "{author_email}"
-top_modules:
+module_order:
- fastqc:
path_filters:
@@ -109,17 +109,13 @@ top_modules:
path_filters:
- "*/*/map_genome/*"
- - alfa:
- name: "ALFA"
- anchor: "ALFA"
+ - ALFA:
path_filters:
- - "*/ALFA_plots.concat_mqc.png"
+ - "*/*/ALFA/*/*ALFA_feature_counts.tsv"
- - TIN_scores:
- name: "TIN_scores"
- anchor: "TIN_scores"
+ - tin-score:
path_filters:
- - "*/TIN_scores_boxplot_mqc.png"
+ - "*/*/TIN/TIN_score.tsv"
- salmon:
path_filters:
@@ -143,8 +139,6 @@ fn_clean_exts:
- '.pseudo'
- '.salmon'
- '.sam'
- - 'mqc'
- - '.png'
..."""
with open(options.config, "w") as config:
--
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