From 6ded6ada2447dcff9c656fef88b9a50e92f46519 Mon Sep 17 00:00:00 2001
From: BIOPZ-Gypas Foivos <foivos.gypas@unibas.ch>
Date: Fri, 28 May 2021 10:19:27 +0000
Subject: [PATCH] Add biocontainers image for merge_kallisto.R
---
Snakefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/Snakefile b/Snakefile
index 6b311b4..9e1b11f 100644
--- a/Snakefile
+++ b/Snakefile
@@ -944,7 +944,7 @@ rule kallisto_merge_genes:
threads: 1
singularity:
- "docker://zavolab/merge_kallisto:0.6"
+ "docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
@@ -1025,7 +1025,7 @@ rule kallisto_merge_transcripts:
threads: 1
singularity:
- "docker://zavolab/merge_kallisto:0.6"
+ "docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell:
"(merge_kallisto.R \
@@ -1118,7 +1118,7 @@ rule pca_kallisto:
threads: 1
singularity:
- "docker://zavolab/zpca:0.8.3-1"
+ "docker://quay.io/biocontainers/zpca:0.8.3.post1--pyh5e36f6f_0"
shell:
"(zpca-tpm \
--
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