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Commit 6ded6ada authored by BIOPZ-Gypas Foivos's avatar BIOPZ-Gypas Foivos
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Add biocontainers image for merge_kallisto.R

parent 3bc92be6
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1 merge request!86Add biocontainers image for merge_kallisto.R
...@@ -944,7 +944,7 @@ rule kallisto_merge_genes: ...@@ -944,7 +944,7 @@ rule kallisto_merge_genes:
threads: 1 threads: 1
singularity: singularity:
"docker://zavolab/merge_kallisto:0.6" "docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell: shell:
"(merge_kallisto.R \ "(merge_kallisto.R \
...@@ -1025,7 +1025,7 @@ rule kallisto_merge_transcripts: ...@@ -1025,7 +1025,7 @@ rule kallisto_merge_transcripts:
threads: 1 threads: 1
singularity: singularity:
"docker://zavolab/merge_kallisto:0.6" "docker://quay.io/biocontainers/r-merge-kallisto:0.6--hdfd78af_0"
shell: shell:
"(merge_kallisto.R \ "(merge_kallisto.R \
...@@ -1118,7 +1118,7 @@ rule pca_kallisto: ...@@ -1118,7 +1118,7 @@ rule pca_kallisto:
threads: 1 threads: 1
singularity: singularity:
"docker://zavolab/zpca:0.8.3-1" "docker://quay.io/biocontainers/zpca:0.8.3.post1--pyh5e36f6f_0"
shell: shell:
"(zpca-tpm \ "(zpca-tpm \
......
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