diff --git a/tests/test_integration_workflow/test.local.sh b/tests/test_integration_workflow/test.local.sh
index d1a87ae3eb230127f0c1122915a77a9fc3ebe52a..69b179dfa7d3d05c49b615261db891c93a416ad6 100755
--- a/tests/test_integration_workflow/test.local.sh
+++ b/tests/test_integration_workflow/test.local.sh
@@ -7,6 +7,9 @@ cleanup () {
     rm -rf .config/
     rm -rf .fontconfig/
     rm -rf .java/
+    rm -rf .snakemake/
+    rm -rf logs/
+    rm -rf results/
     rm -rf snakemake_report.html
     cd $user_dir
     echo "Exit status: $rc"