diff --git a/workflow/rules/paired_end.snakefile.smk b/workflow/rules/paired_end.snakefile.smk index d7f40dd71c1728c2bd7e3ddb6e02b86bd6d878c9..d66b120f1a03b787af23b27e96397cfd97e37117 100644 --- a/workflow/rules/paired_end.snakefile.smk +++ b/workflow/rules/paired_end.snakefile.smk @@ -228,7 +228,7 @@ rule pe_map_genome_star: --readFilesCommand zcat \ --outSAMunmapped None \ --outFilterMultimapNmax {params.multimappers} \ - --outFilterMultimapScoreRange 1 \ + --outFilterMultimapScoreRange 0 \ --outFileNamePrefix {params.outFileNamePrefix} \ --outSAMattributes All \ --outStd BAM_SortedByCoordinate \ diff --git a/workflow/rules/single_end.snakefile.smk b/workflow/rules/single_end.snakefile.smk index df41f963df128f4598509a8e778ab52197e92008..0aac0658baa4fcce737d62a896a18e336b0bb6fe 100644 --- a/workflow/rules/single_end.snakefile.smk +++ b/workflow/rules/single_end.snakefile.smk @@ -182,7 +182,7 @@ rule map_genome_star: --readFilesCommand zcat \ --outSAMunmapped None \ --outFilterMultimapNmax {params.multimappers} \ - --outFilterMultimapScoreRange 1 \ + --outFilterMultimapScoreRange 0 \ --outFileNamePrefix {params.outFileNamePrefix} \ --outSAMattributes All \ --outStd BAM_SortedByCoordinate \