From 84fee8312e119e71f3970ac76df7ff7281c49cb3 Mon Sep 17 00:00:00 2001
From: burri0000 <dominik.burri@unibas.ch>
Date: Mon, 24 Feb 2020 13:41:03 +0100
Subject: [PATCH] orientation readout corrected
---
Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Snakefile b/Snakefile
index 7967219..ba176d9 100644
--- a/Snakefile
+++ b/Snakefile
@@ -323,7 +323,7 @@ rule calculate_TIN_scores:
### ALFA: Annotation Landscape For Aligned reads
#################################################################################
-directionality = {"--fr": "fr-firststrand", "--rv": "fr-secondstrand"}
+directionality = {"--fr": "fr-firststrand", "--rf": "fr-secondstrand"}
rename_files = {"fr-firststrand": ("Signal.UniqueMultiple.out.plus.bg",
"Signal.UniqueMultiple.out.minus.bg"),
"fr-secondstrand": ("Signal.UniqueMultiple.out.minus.bg",
--
GitLab