From 8bdde6f04b5f59d89e356aa7fa4dde1a0ef06076 Mon Sep 17 00:00:00 2001
From: fgypas <fgypas@gmail.com>
Date: Tue, 24 Aug 2021 17:43:25 +0200
Subject: [PATCH] Fix typo
---
workflow/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflow/Snakefile b/workflow/Snakefile
index 6923293..f702c7e 100644
--- a/workflow/Snakefile
+++ b/workflow/Snakefile
@@ -707,7 +707,7 @@ rule sort_genomic_alignment_samtools:
shell:
"(samtools sort \
-o {output.bam} \
- -T {params.prefix_temp_dir} \
+ -T {output.prefix_temp_dir} \
-@ {threads} \
{params.additional_params} \
{input.bam}) \
--
GitLab