From 8c9ef971f10d15f74d6375b7390e3c1364394b4f Mon Sep 17 00:00:00 2001
From: burri0000 <dominik.burri@unibas.ch>
Date: Fri, 14 Feb 2020 16:10:41 +0100
Subject: [PATCH] change alfa_index log file
---
snakemake/Snakefile | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/snakemake/Snakefile b/snakemake/Snakefile
index da99b7e..554e9bf 100644
--- a/snakemake/Snakefile
+++ b/snakemake/Snakefile
@@ -180,7 +180,7 @@ rule generate_alfa_index:
singularity:
"docker://zavolab/alfa:1.1.1"
log:
- "logs/generate_alfa_index_{organism}_{index_size}.log"
+ os.path.join(config["local_log"], "{organism}_{index_size}_generate_alfa_index.log")
shell:
"alfa -a {input.gtf} \
-g {params.genome_index} \
--
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