diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 0b9cc4172ba3f10aa20bffa4e5fdfde066309f42..771bf2b488785040c83a37e005c1b7045da37bbb 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -4,7 +4,7 @@ before_script:
   - apt update && apt install -y gcc
   - conda init bash && source ~/.bashrc && echo $CONDA_DEFAULT_ENV
   - conda env create -f install/environment.root.yml
-  - conda activate rnaseq_pipeline && echo $CONDA_DEFAULT_ENV
+  - conda activate rhea && echo $CONDA_DEFAULT_ENV
   - conda env update -f install/environment.dev.yml
 
 test:
diff --git a/README.md b/README.md
index 3c966b4bc7e692737143b4ae67fa84adffbfe4fd..c4c32929964c49cd58de998e23f2e78fd1555ea6 100644
--- a/README.md
+++ b/README.md
@@ -1,4 +1,4 @@
-# RNA-Seq pipeline
+# Rhea pipeline
 
 [Snakemake][snakemake] workflow for general purpose RNA-Seq library annotation
 developed by the [Zavolan lab][zavolan-lab].
@@ -29,8 +29,8 @@ Traverse to the desired path on your file system, then clone the repository and
 move into it with:
 
 ```bash
-git clone ssh://git@git.scicore.unibas.ch:2222/zavolan_group/pipelines/rnaseqpipeline.git
-cd rnaseqpipeline
+git clone ssh://git@git.scicore.unibas.ch:2222/zavolan_group/pipelines/rhea.git
+cd rhea
 ```
 
 ### Installing Conda
@@ -87,7 +87,7 @@ conda env create -f install/environment.root.yml
 Activate the Conda environment with:
 
 ```bash
-conda activate rnaseq_pipeline
+conda activate rhea
 ```
 
 ### Installing non-essential dependencies
diff --git a/install/environment.dev.yml b/install/environment.dev.yml
index ea44dfbcfb7f02409682d231014e528c2845cb83..ab5c30ac6c60c998193981c084150d4bc907b41d 100644
--- a/install/environment.dev.yml
+++ b/install/environment.dev.yml
@@ -1,4 +1,4 @@
-name: rnaseq_pipeline
+name: rhea
 channels:
   - bioconda
   - conda-forge
diff --git a/install/environment.root.yml b/install/environment.root.yml
index 9c6d56dd4a0ab2d3a1f7907549a71053c35a4cd0..7017feb85a963093898030ae135b094244c4774d 100644
--- a/install/environment.root.yml
+++ b/install/environment.root.yml
@@ -1,4 +1,4 @@
-name: rnaseq_pipeline
+name: rhea
 channels:
   - conda-forge
   - defaults
diff --git a/install/environment.yml b/install/environment.yml
index dd6b5d5061a9186dfa6bb37f5f9caf0a8886c06b..4fa641ab259484f747f4af4d70f5464d41649aab 100644
--- a/install/environment.yml
+++ b/install/environment.yml
@@ -1,4 +1,4 @@
-name: rnaseq_pipeline
+name: rhea
 channels:
   - defaults
 dependencies:
diff --git a/pipeline_documentation.md b/pipeline_documentation.md
index 18a64881b281385ca4d370e95683d5efa2af1263..44918429da7882bac440fc34d966bae575185c1d 100644
--- a/pipeline_documentation.md
+++ b/pipeline_documentation.md
@@ -1,4 +1,4 @@
-# RNAseq pipeline documentation
+# Rhea workflow documentation
 This document describes the individual rules of the pipeline for information purposes. For instructions on installation and usage please refer to the [README](README.md).    
 
 ## Overview