From d4a375879f0e82deb643ac67849389b7742f172f Mon Sep 17 00:00:00 2001
From: BIOPZ-Gypas Foivos <foivos.gypas@unibas.ch>
Date: Fri, 28 May 2021 10:42:15 +0000
Subject: [PATCH] Add biocontainers image for tin-score-calculation
---
Snakefile | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/Snakefile b/Snakefile
index 9e1b11f..1d41cb2 100644
--- a/Snakefile
+++ b/Snakefile
@@ -698,10 +698,10 @@ rule calculate_TIN_scores:
threads: 8
singularity:
- "docker://zavolab/tin_score_calculation:0.2.0-slim"
+ "docker://quay.io/biocontainers/tin-score-calculation:0.4--pyh5e36f6f_0"
shell:
- "(tin_score_calculation.py \
+ "(calculate-tin.py \
-i {input.bam} \
-r {input.transcripts_bed12} \
--names {params.sample} \
--
GitLab