diff --git a/workflow/Snakefile b/workflow/Snakefile index 6b0bed8fe92317e941637b52454b747c27ead81f..8898894d2dc34e25a4a0910bf1ab67eb02d02acb 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -1486,30 +1486,24 @@ rule alfa_qc: ''' input: plus = lambda wildcards: - expand( - os.path.join( - config["output_dir"], - "samples", - "{sample}", - "ALFA", - "{unique}", - "{sample}.{unique}.plus.bg"), - sample=wildcards.sample, - unique=alfa_dict[wildcards.renamed_unique] + os.path.join( + config["output_dir"], + "samples", + wildcards.sample, + "ALFA", + alfa_dict[wildcards.renamed_unique], + wildcards.sample + "." + alfa_dict[wildcards.renamed_unique] + ".plus.bg" ), minus = lambda wildcards: - expand( - os.path.join( - config["output_dir"], - "samples", - "{sample}", - "ALFA", - "{unique}", - "{sample}.{unique}.minus.bg"), - sample=wildcards.sample, - unique=alfa_dict[wildcards.renamed_unique] - ), + os.path.join( + config["output_dir"], + "samples", + wildcards.sample, + "ALFA", + alfa_dict[wildcards.renamed_unique], + wildcards.sample + "." + alfa_dict[wildcards.renamed_unique] + ".minus.bg" + ), gtf = lambda wildcards: os.path.join(