Integrate PCA plot in multiqc report
The rules (pca_salmon
, pca_kallisto
) generate the PCA results for genes and transcripts. The plots should be integrated into multiqc and not as custom plots as we have them now.
This involves:
-
Add code to generate the plots in https://github.com/zavolanlab/multiqc-plugins -
Use the new Dockerfile in zarp and adjust Snakefile (wiring of rules)
Edited by BIOPZ-Bak Maciej