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Use bioconda docker images for widely used public tools

Use bioconda docker images for widely used tools.

Images to be replaced in the Snakefile:

  • bedtools:2.27
  • bedgraphtobigwig:4
  • cutadapt:1.16
  • kallisto:0.46.1
  • alfa:1.1.1
  • fastqc:0.11.9
  • samtools:1.10
  • bash:5.0.16
  • star:2.7.3a
  • salmon:1.1.0
  • gffread:0.11.7
Edited by BIOPZ-Gypas Foivos
To upload designs, you'll need to enable LFS and have an admin enable hashed storage. More information