Snakemake report statistics error

changed milestone to %downstream

added Bug label

assigned to @gypas

Check the version of snakemake that is used. This is most probably because of the module that creates the report.

added To Do label

added Doing label and removed To Do label

This is not the case anymore. I attach a screenshot showing that when you roll over the rule it displays the time in seconds. The result you get both with local and slurm execution.

@katsanto I think we can close this.

I think I agree with @bakma on this.. if all running times are so low why are the differences not visible? Is there a hardcoded cutoff on the running time?

I will make a test run with a real dataset to check.

Isn't this a bit suspicious that all rules are at the initial line? Or is this an artifact of of a small dummy input, maybe?

mentioned in issue #179 (closed)

So far my conclusion is that it displays the waiting time in the queue and not the actual run time. See also an open issue here: https://github.com/snakemake/snakemake/issues/517

When running locally it calculates the correct time, but it displays all the results on the same y-axis.

I am testing with a newer version of snakemake, to see if this is fixed.

Check if this is fixed in the newest snakemake version otherwise drop completely.

I wouldn't drop this completely, we can just document and point to the issue on Snakemake. Once it's fixed and we upgrade to the corresponding Snakemake version, we'll benefit immediately. Plus even now it should be fully function for local execution and possibly at least very slightly functional/informative for cluster execution (perhaps might even work for clusters other than Slurm?)