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Milestone due date
Add zgtf biocontainers image
!85
· created
May 12, 2021
by
BIOPZ-Gypas Foivos
pipeline
pipeline
Merged
1
updated
May 28, 2021
MultiQC report: custom plugin for zpca
!82
· created
Mar 26, 2021
by
BIOPZ-Bak Maciej
downstream
Doing
downstream
Merged
Approved
9
updated
May 11, 2021
Replace zpca container from zavolab to biocontainers.
!81
· created
Mar 26, 2021
by
BIOPZ-Gypas Foivos
pipeline
pipeline
Merged
2
updated
May 28, 2021
Remove default arguments from rules
!80
· created
Mar 19, 2021
by
BIOPZ-Katsantoni Maria
pipeline
Merged
Approved
0
updated
Mar 25, 2021
Remove unnecessary files in results directory
!78
· created
Nov 19, 2020
by
Dominik Burri
pipeline
Merged
Approved
17
updated
Feb 26, 2021
PCA analysis on genes and transcripts TPM for kallisto and salmon
3 of 4 checklist items completed
!77
· created
Sep 23, 2020
by
BIOPZ-Gypas Foivos
downstream
Discuss
Documentation
Doing
Merged
Approved
28
updated
Oct 16, 2020
Merge kallisto
!75
· created
Jun 19, 2020
by
BIOPZ-Iborra de Toledo Paula
v0.2.0 release
Merged
1
updated
Jun 23, 2020
feat: add support for multi-lane samples
!71
· created
Jun 15, 2020
by
BIOPZ-Katsantoni Maria
v0.2.0 release
Testing & CI/CD
Merged
18
updated
Jun 15, 2020
Salmon argument fix
!67
· created
Jun 12, 2020
by
BIOPZ-Katsantoni Maria
v0.2.0 release
Bug
Merged
0
updated
Jun 12, 2020
Set STAR multimapper parameter
!66
· created
Jun 12, 2020
by
Dominik Burri
v0.2.0 release
Merged
0
updated
Jun 12, 2020
Gtf2bed update
!65
· created
Jun 10, 2020
by
BIOPZ-Gypas Foivos
v0.2.0 release
Merged
0
updated
Jun 10, 2020
Add Snakemake report
!64
· created
Jun 05, 2020
by
BIOPZ-Bak Maciej
v0.2.0 release
Blocked
Merged
16
updated
Jun 12, 2020
docs: GitHub migration notice
!105
· created
Sep 09, 2021
by
Alex Kanitz
Merged
Approved
0
updated
Sep 09, 2021
Update documentation
!104
· created
Sep 08, 2021
by
BIOPZ-Katsantoni Maria
Merged
Approved
3
updated
Sep 09, 2021
Add temp directories for ALFA
!103
· created
Aug 25, 2021
by
BIOPZ-Gypas Foivos
Merged
Approved
4
updated
Aug 26, 2021
Change alfa output folder names
!102
· created
Aug 24, 2021
by
BIOPZ-Katsantoni Maria
Merged
Approved
4
updated
Aug 24, 2021
Feature/samtools sort after STAR
!101
· created
Aug 23, 2021
by
BIOPZ-Gypas Foivos
pipeline
Merged
Approved
1
7
updated
Aug 25, 2021
docs: remove old labkey section
!100
· created
Aug 23, 2021
by
BIOPZ-Bak Maciej
Documentation
Doing
Merged
Approved
1
updated
Aug 23, 2021
Remove sample specific options and use them as rule specific.
!98
· created
Aug 20, 2021
by
BIOPZ-Katsantoni Maria
Merged
Approved
1
2
updated
Aug 23, 2021
Minor fixes
!96
· created
Jul 19, 2021
by
Dominik Burri
Merged
Approved
0
updated
Jul 21, 2021
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