Merge requests · zavolan_group / pipelines / ZARP · GitLab

Add zgtf biocontainers image

!85 · created May 12, 2021 by BIOPZ-Gypas Foivos pipeline
pipeline
- Merged
- 1
updated May 28, 2021
Replace zpca container from zavolab to biocontainers.

!81 · created Mar 26, 2021 by BIOPZ-Gypas Foivos pipeline
pipeline
- Merged
- 2
updated May 28, 2021
MultiQC report: custom plugin for zpca

!82 · created Mar 26, 2021 by BIOPZ-Bak Maciej downstream
Doing downstream
- Merged
- 9
- Approved
updated May 11, 2021
Biocontainer images

!84 · created Apr 23, 2021 by BIOPZ-Gypas Foivos
- Merged
- 6
- Approved
updated May 07, 2021
feat: enable user to configure CLI params per rule

!83 · created Apr 09, 2021 by CJHerrmann
- Merged
- 13
- Approved
updated Apr 15, 2021
Remove default arguments from rules

!80 · created Mar 19, 2021 by BIOPZ-Katsantoni Maria pipeline
- Merged
- Approved
updated Mar 25, 2021
Remove unnecessary files in results directory

!78 · created Nov 19, 2020 by Dominik Burri pipeline
- Merged
- 17
- Approved
updated Feb 26, 2021
MultiQC plugins for TIN scores and ALFA

!79 · created Nov 20, 2020 by BIOPZ-Bak Maciej
- Merged
- 15
- Approved
updated Feb 11, 2021
PCA analysis on genes and transcripts TPM for kallisto and salmon 3 of 4 checklist items completed

!77 · created Sep 23, 2020 by BIOPZ-Gypas Foivos downstream
Discuss Documentation Doing
- Merged
- 28
- Approved
updated Oct 16, 2020
Bump version to v0.2.0

!76 · created Jun 25, 2020 by Alex Kanitz master
- Merged
updated Jun 25, 2020
docs: revised terminology for non-experts

!73 · created Jun 17, 2020 by MihaelaZavolan
updated Jun 25, 2020
Merge kallisto

!75 · created Jun 19, 2020 by BIOPZ-Iborra de Toledo Paula v0.2.0 release
- Merged
- 1
updated Jun 23, 2020
Cluster.json was updated

!74 · created Jun 18, 2020 by BIOPZ-Börsch Anastasiya
updated Jun 18, 2020
feat: add support for multi-lane samples

!71 · created Jun 15, 2020 by BIOPZ-Katsantoni Maria v0.2.0 release
Testing & CI/CD
- Merged
- 18
updated Jun 15, 2020
refactor: rename LabKey/input table column

!70 · created Jun 12, 2020 by BIOPZ-Börsch Anastasiya
- Merged
- 2
updated Jun 15, 2020
Add Snakemake report

!64 · created Jun 05, 2020 by BIOPZ-Bak Maciej v0.2.0 release
Blocked
- Merged
- 16
updated Jun 12, 2020
docs: rename project/workflow

!69 · created Jun 12, 2020 by Alex Kanitz
- Merged
updated Jun 12, 2020
fix(prepare_inputs): support relative paths

!68 · created Jun 12, 2020 by Alex Kanitz
- Merged
updated Jun 12, 2020
Salmon argument fix

!67 · created Jun 12, 2020 by BIOPZ-Katsantoni Maria v0.2.0 release
Bug
updated Jun 12, 2020
Set STAR multimapper parameter

!66 · created Jun 12, 2020 by Dominik Burri v0.2.0 release
updated Jun 12, 2020

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