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Created date
fixed snakemake subworkflow typos/bugs
!45
· created
Mar 13, 2020
by
BIOPZ-Katsantoni Maria
v0.1.0 release
master
Bug
Merged
updated
Mar 13, 2020
Documentation of pipeline steps
!44
· created
Mar 13, 2020
by
CJHerrmann
master
Merged
updated
Mar 13, 2020
add TIN score merge and plot steps
!43
· created
Mar 12, 2020
by
BIOPZ-Bak Maciej
master
Merged
2
updated
Mar 12, 2020
added ALFA documentation
!42
· created
Mar 12, 2020
by
Dominik Burri
documentation
Merged
2
updated
Mar 13, 2020
Alfa integration
!41
· created
Mar 12, 2020
by
Dominik Burri
v0.1.0 release
master
Merged
6
updated
Mar 12, 2020
Documentation
!40
· created
Mar 11, 2020
by
CJHerrmann
master
Closed
2
updated
Mar 12, 2020
Alfa qc
!39
· created
Mar 11, 2020
by
Dominik Burri
v0.1.0 release
master
Closed
14
updated
Mar 12, 2020
Simplify star_rpm & index_genomic_alignment_samtools.
!38
· created
Mar 06, 2020
by
BIOPZ-Gypas Foivos
v0.1.0 release
master
Doing
Merged
1
updated
Mar 07, 2020
Replace cufflinks image with gffread image
!37
· created
Mar 06, 2020
by
BIOPZ-Gypas Foivos
v0.1.0 release
master
Testing & CI/CD
Merged
updated
Mar 06, 2020
Transcriptome from genome and gene annotations
!36
· created
Mar 06, 2020
by
BIOPZ-Iborra de Toledo Paula
master
Merged
1
updated
Mar 06, 2020
Normalised coverage
!35
· created
Mar 06, 2020
by
Dominik Burri
master
Merged
6
updated
Mar 07, 2020
Restructure pipeline
!34
· created
Mar 06, 2020
by
BIOPZ-Katsantoni Maria
v0.1.0 release
master
Merged
1
updated
Mar 06, 2020
Generate gene and transcript count tables from salmon
!33
· created
Feb 24, 2020
by
BIOPZ-Gypas Foivos
master
Merged
updated
Feb 24, 2020
Use minified docker images
!32
· created
Feb 21, 2020
by
Alex Kanitz
master
Merged
updated
Feb 21, 2020
Handle polyA processing in input preparation script
!31
· created
Feb 21, 2020
by
BIOPZ-Katsantoni Maria
master
Merged
updated
Feb 21, 2020
Rule to collect all TPM values from Salmon added
!30
· created
Feb 21, 2020
by
BIOPZ-Iborra de Toledo Paula
master
Merged
updated
Feb 21, 2020
Add pipeline updates into MultiQC dev branch
!29
· created
Feb 21, 2020
by
BIOPZ-Bak Maciej
MultiQC
Closed
1
updated
Feb 21, 2020
create log directories in Snakefile
!28
· created
Feb 20, 2020
by
Alex Kanitz
master
Merged
updated
Feb 20, 2020
fix broken links in docs
!27
· created
Feb 18, 2020
by
Alex Kanitz
master
Merged
updated
Feb 18, 2020
run tests in verbose mode
!26
· created
Feb 18, 2020
by
Alex Kanitz
master
Merged
updated
Feb 18, 2020
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