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pipeline
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19
- Path to Snakefile of test.slurm.sh in tests are wrong
- Build biocontainer docker image for multiqc-plugins
- Build biocontainer docker image for tin-score-calculation
- Build biocontainer docker image for merge_kallisto
- Build biocontainer docker image for zgtf
- Build biocontainer docker image for zpca
- Use bioconda docker images for widely used public tools
- Move TIN score repo to github
- Docker rate limit
- Docker image cutadapt does not use pigz
- Results directory uses lots of disk space
- Update docs
- Refactor CI/CD testing: eliminate redundancy
- RO-crate packaging of the workflow
- Support for conda environments
- Support for unstranded data
- Remove arguments with default setting from Snakefiles (general)
- Enforce common code style
- Use CRAM instead of BAM
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