labkey	snakemake
Entry_Date	entry_date
Path_Fastq_Files	fastq_path
Condition_Name	condition
Sample_Name	sample_name
Single_Paired	seqmode
Mate1_File	fq1
Mate2_File	fq2
Mate1_Direction	mate1_direction
Mate2_Direction	mate2_direction
Mate1_5p_Adapter	fq1_5p
Mate1_3p_Adapter	fq1_3p
Mate2_5p_Adapter	fq2_5p
Mate2_3p_Adapter	fq2_3p
Fragment_Length_Mean	mean
Fragment_Length_SD	sd
Quality_Control_Flag	quality_control_flag
Checksum_Raw_FASTQ_Mate1	mate1_checksum
Checksum_Raw_FASTQ_Mate2	mate2_checksum
File_Name_Metadata_File	metadata
Name_Quality_Control_File_Mate1	mate1_quality
Name_Quality_Control_File_Mate2	mate2_quality
Organism	organism
TaxonID	taxon_id
Strain_Isolate_Breed_Ecotype	strain_name
Strain_Isolate_Breed_Ecotype_ID	strain_id
Biomaterial_Provider	biomaterial_provider
Source_Tissue_Name	source_name
Tissue_Code	tissue_code
Additional_Tissue_Description	tissue_description
Genotype_Short_Name	genotype_name
Genotype_Description	genotype_description
Disease_Short_Name	disease_name
Disease_Description	disease_description
Treatment_Short_Name	treatment
Treatment_Description	treatment_description
Gender	gender
Age	age
Developmental_Stage	development_stage
Passage_Number	passage_number
Sample_Preparation_Date	sample_prep_date
Prepared_By	prepared_by
Documentation	documentation
Protocol_File	protocol_file
Sequencing_Date	seq_date
Sequencing_Instrument	seq_instrument
Library_preparation_kit	library_kit
Cycles	cycles
Molecule	molecule
Contaminant_Sequences	contaminant_seqs
BioAnalyzer_File	bioanalyser_file