sample	seqmode	fq1	fq2	index_size	kmer	fq1_3p	fq1_5p	fq2_3p	fq2_5p	organism	gtf	genome	sd	mean	kallisto_directionality	alfa_directionality	alfa_plus	alfa_minus	multimappers	soft_clip	pass_mode	libtype	fq1_polya_3p	fq1_polya_5p	fq2_polya_3p	fq2_polya_5p
synthetic_10_reads_paired_synthetic_10_reads_paired	pe	../input_files/pe_lane1/synthetic_split_lane1.mate_1.fastq.gz	../input_files/pe_lane1/synthetic_split_lane1.mate_2.fastq.gz	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	--fr	fr-firststrand	str1	str2	10	EndToEnd	None	A	AAAAAAAAAAAAAAA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	TTTTTTTTTTTTTTT
synthetic_10_reads_paired_synthetic_10_reads_paired	pe	../input_files/pe_lane2/synthetic_split_lane2.mate_1.fastq.gz	../input_files/pe_lane2/synthetic_split_lane2.mate_2.fastq.gz	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	--fr	fr-firststrand	str1	str2	10	EndToEnd	None	A	AAAAAAAAAAAAAAA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	TTTTTTTTTTTTTTT
synthetic_10_reads_mate_1_synthetic_10_reads_mate_1	se	../input_files/se_lane1/synthetic_split_lane1.mate_1.fastq.gz	XXXXXXXXXXXXXXX	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	--fr	fr-firststrand	str1	str2	10	EndToEnd	None	A	AAAAAAAAAAAAAAA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX
synthetic_10_reads_mate_1_synthetic_10_reads_mate_1	se	../input_files/se_lane2/synthetic_split_lane2.mate_1.fastq.gz	XXXXXXXXXXXXXXX	75	31	AGATCGGAAGAGCACA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	homo_sapiens	../input_files/homo_sapiens/annotation.gtf	../input_files/homo_sapiens/genome.fa	100	250	--fr	fr-firststrand	str1	str2	10	EndToEnd	None	A	AAAAAAAAAAAAAAA	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX	XXXXXXXXXXXXXXX