<<<<<<< HEAD snakemake_dag 0 finish ======= snakemake_dag 0 finish >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 1 <<<<<<< HEAD pe_fastqc sample: synthetic_10_reads_paired_synthetic_10_reads_paired ======= pe_fastqc sample: synthetic_10_reads_paired_synthetic_10_reads_paired >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 1->0 <<<<<<< HEAD ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 2 <<<<<<< HEAD fastqc sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1 ======= fastqc sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 2->0 <<<<<<< HEAD ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 3 <<<<<<< HEAD pe_quantification_salmon ======= pe_quantification_salmon >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 3->0 <<<<<<< HEAD 9 salmon_quantmerge_genes 3->9 10 salmon_quantmerge_tr 3->10 ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 4 <<<<<<< HEAD quantification_salmon ======= quantification_salmon >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 4->0 <<<<<<< HEAD 4->9 4->10 ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 5 <<<<<<< HEAD pe_genome_quantification_kallisto ======= pe_genome_quantification_kallisto >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 5->0 <<<<<<< HEAD ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 6 <<<<<<< HEAD genome_quantification_kallisto ======= genome_quantification_kallisto >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 6->0 <<<<<<< HEAD ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 7 <<<<<<< HEAD calculate_TIN_scores seqmode: paired_end ======= calculate_TIN_scores seqmode: paired_end >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 7->0 <<<<<<< HEAD ======= >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 8 <<<<<<< HEAD calculate_TIN_scores seqmode: single_end ======= calculate_TIN_scores seqmode: single_end >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 8->0 <<<<<<< HEAD 9->0 10->0 ======= 9 pe_remove_polya_cutadapt 9->3 9->5 18 pe_map_genome_star 9->18 10 create_index_salmon kmer: 31 organism: homo_sapiens 10->3 10->4 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 11 <<<<<<< HEAD pe_remove_polya_cutadapt 11->3 11->5 20 pe_map_genome_star 11->20 ======= remove_polya_cutadapt 11->4 11->6 19 map_genome_star 11->19 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 12 <<<<<<< HEAD create_index_salmon kmer: 31 organism: homo_sapiens 12->3 12->4 ======= create_index_kallisto organism: homo_sapiens 12->5 12->6 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 13 <<<<<<< HEAD remove_polya_cutadapt 13->4 13->6 21 map_genome_star 13->21 ======= pe_index_genomic_alignment_samtools 13->7 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 14 <<<<<<< HEAD create_index_kallisto organism: homo_sapiens 14->5 14->6 ======= extract_transcripts_as_bed12 14->7 14->8 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 15 <<<<<<< HEAD pe_index_genomic_alignment_samtools 15->7 ======= index_genomic_alignment_samtools 15->8 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 16 <<<<<<< HEAD extract_transcripts_as_bed12 16->7 16->8 ======= pe_remove_adapters_cutadapt sample: synthetic_10_reads_paired_synthetic_10_reads_paired 16->9 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68 17 <<<<<<< HEAD index_genomic_alignment_samtools 17->8 18 pe_remove_adapters_cutadapt sample: synthetic_10_reads_paired_synthetic_10_reads_paired 18->11 19 remove_adapters_cutadapt sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1 19->13 20->15 21->17 22 create_index_star index_size: 75 organism: homo_sapiens 22->20 22->21 ======= remove_adapters_cutadapt sample: synthetic_10_reads_mate_1_synthetic_10_reads_mate_1 17->11 18->13 19->15 20 create_index_star index_size: 75 organism: homo_sapiens 20->18 20->19 >>>>>>> 641f2cbb4025df946ad340a805cb788434b3ba68