sample	fq1	fq2	fq1_3p	fq1_5p	fq2_3p	fq2_5p	fq1_polya	fq2_polya	organism	index_size	multimappers	soft_clip	pass_mode	gtf_filtered	libtype	kallisto_directionality	mean	sd	genome	gtf	tr_fasta_filtered	kmer	seqmode
synthetic_10_reads_paired	input_files/synthetic.mate_1.fastq.gz	input_files/synthetic.mate_2.fastq.gz	AGATCGGAAGAGCACA	XXXXXXXX	AGATCGGAAGAGCGT	XXXXXXXX	AAAAAAAAAAAAAAAAAAAA	TTTTTTTTTTTTTTTTTTT	homo_sapiens	76	10	Local	Basic	input_files/chr1-10000-20000.gtf	A	--fr	250	100	input_files/chr1-10000-20000.fa	input_files/chr1-10000-20000.gtf	input_files/chr1-10000-20000.transcripts.fa	31	paired_end
synthetic_10_reads_mate_1	input_files/synthetic.mate_1.fastq.gz		AGATCGGAAGAGCACA	XXXXXXXX			AAAAAAAAAAAAAAAAAAAA		homo_sapiens	76	10	Local	Basic	input_files/chr1-10000-20000.gtf	A	--fr	250	100	input_files/chr1-10000-20000.fa	input_files/chr1-10000-20000.gtf	input_files/chr1-10000-20000.transcripts.fa	31	single_end
synthetic_10_reads_mate_2	input_files/synthetic.mate_2.fastq.gz		AGATCGGAAGAGCACA	XXXXXXXX			AAAAAAAAAAAAAAAAAAAA		homo_sapiens	76	10	Local	Basic	input_files/chr1-10000-20000.gtf	A	--fr	250	100	input_files/chr1-10000-20000.fa	input_files/chr1-10000-20000.gtf	input_files/chr1-10000-20000.transcripts.fa	31	single_end