home.md

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 * What is the user story?
 * What are the defined use cases?
+* What sets Rhea apart from other similar efforts?
 
 ## Road map
 
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   * Overall code organization
     * How to coordinate different pipelines
     * How to deal with interactive parts in between
+
+## Other RNA-Seq analysis pipelines
+
+### Published
+
+2017: aRNApipe - https://academic.oup.com/bioinformatics/article/33/11/1727/2929343
+2017: RNACocktail - https://www.nature.com/articles/s41467-017-00050-4
+2018: VIPER - https://link.springer.com/article/10.1186/s12859-018-2139-9
+2018: hppRNA - https://academic.oup.com/bib/article-abstract/19/4/622/2918128
+2019: UTAP - https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2728-2
+2019: BISR - https://link.springer.com/article/10.1186/s12859-019-3251-1
+2019: GEO2RNAseq - https://www.biorxiv.org/content/10.1101/771063v1
+2019: Shiny-Seq - https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-019-4471-1
+https://github.com/nf-core/rnaseq