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* What is the user story?
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* What are the defined use cases?
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* What sets Rhea apart from other similar efforts?
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## Road map
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* Prepare for integration into web service?
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* Overall code organization
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* How to coordinate different pipelines
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* How to deal with interactive parts in between |
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* How to deal with interactive parts in between
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## Other RNA-Seq analysis pipelines
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### Published
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2017: aRNApipe - https://academic.oup.com/bioinformatics/article/33/11/1727/2929343
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2017: RNACocktail - https://www.nature.com/articles/s41467-017-00050-4
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2018: VIPER - https://link.springer.com/article/10.1186/s12859-018-2139-9
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2018: hppRNA - https://academic.oup.com/bib/article-abstract/19/4/622/2918128
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2019: UTAP - https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2728-2
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2019: BISR - https://link.springer.com/article/10.1186/s12859-019-3251-1
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2019: GEO2RNAseq - https://www.biorxiv.org/content/10.1101/771063v1
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2019: Shiny-Seq - https://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-019-4471-1
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https://github.com/nf-core/rnaseq |