From 129521f664b82ec899f937bf4654933c99388d44 Mon Sep 17 00:00:00 2001
From: Bastian Wagner <bastian.wagner@unibas.ch>
Date: Thu, 10 Aug 2023 11:32:19 +0000
Subject: [PATCH] Update test_files/copy_number_file.csv
---
.DS_Store | Bin 0 -> 6148 bytes
.idea/.gitignore | 8 ++++++++
.idea/cdna-generator.iml | 8 ++++++++
.idea/inspectionProfiles/Project_Default.xml | 14 ++++++++++++++
.idea/inspectionProfiles/profiles_settings.xml | 6 ++++++
.idea/misc.xml | 4 ++++
.idea/modules.xml | 8 ++++++++
.idea/sonarlint/issuestore/index.pb | 0
.idea/vcs.xml | 6 ++++++
test_files/copy_number_file.csv | 6 ++++++
10 files changed, 60 insertions(+)
create mode 100644 .DS_Store
create mode 100644 .idea/.gitignore
create mode 100644 .idea/cdna-generator.iml
create mode 100644 .idea/inspectionProfiles/Project_Default.xml
create mode 100644 .idea/inspectionProfiles/profiles_settings.xml
create mode 100644 .idea/misc.xml
create mode 100644 .idea/modules.xml
create mode 100644 .idea/sonarlint/issuestore/index.pb
create mode 100644 .idea/vcs.xml
create mode 100644 test_files/copy_number_file.csv
diff --git a/.DS_Store b/.DS_Store
new file mode 100644
index 0000000000000000000000000000000000000000..9546fc661ae673f31198c8a535f3a71d2db64662
GIT binary patch
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diff --git a/.idea/.gitignore b/.idea/.gitignore
new file mode 100644
index 0000000..13566b8
--- /dev/null
+++ b/.idea/.gitignore
@@ -0,0 +1,8 @@
+# Default ignored files
+/shelf/
+/workspace.xml
+# Editor-based HTTP Client requests
+/httpRequests/
+# Datasource local storage ignored files
+/dataSources/
+/dataSources.local.xml
diff --git a/.idea/cdna-generator.iml b/.idea/cdna-generator.iml
new file mode 100644
index 0000000..d0876a7
--- /dev/null
+++ b/.idea/cdna-generator.iml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="PYTHON_MODULE" version="4">
+ <component name="NewModuleRootManager">
+ <content url="file://$MODULE_DIR$" />
+ <orderEntry type="inheritedJdk" />
+ <orderEntry type="sourceFolder" forTests="false" />
+ </component>
+</module>
\ No newline at end of file
diff --git a/.idea/inspectionProfiles/Project_Default.xml b/.idea/inspectionProfiles/Project_Default.xml
new file mode 100644
index 0000000..25bde2c
--- /dev/null
+++ b/.idea/inspectionProfiles/Project_Default.xml
@@ -0,0 +1,14 @@
+<component name="InspectionProjectProfileManager">
+ <profile version="1.0">
+ <option name="myName" value="Project Default" />
+ <inspection_tool class="PyPackageRequirementsInspection" enabled="true" level="WARNING" enabled_by_default="true">
+ <option name="ignoredPackages">
+ <value>
+ <list size="1">
+ <item index="0" class="java.lang.String" itemvalue="numpy" />
+ </list>
+ </value>
+ </option>
+ </inspection_tool>
+ </profile>
+</component>
\ No newline at end of file
diff --git a/.idea/inspectionProfiles/profiles_settings.xml b/.idea/inspectionProfiles/profiles_settings.xml
new file mode 100644
index 0000000..105ce2d
--- /dev/null
+++ b/.idea/inspectionProfiles/profiles_settings.xml
@@ -0,0 +1,6 @@
+<component name="InspectionProjectProfileManager">
+ <settings>
+ <option name="USE_PROJECT_PROFILE" value="false" />
+ <version value="1.0" />
+ </settings>
+</component>
\ No newline at end of file
diff --git a/.idea/misc.xml b/.idea/misc.xml
new file mode 100644
index 0000000..d1e22ec
--- /dev/null
+++ b/.idea/misc.xml
@@ -0,0 +1,4 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+ <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.8" project-jdk-type="Python SDK" />
+</project>
\ No newline at end of file
diff --git a/.idea/modules.xml b/.idea/modules.xml
new file mode 100644
index 0000000..77e1190
--- /dev/null
+++ b/.idea/modules.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+ <component name="ProjectModuleManager">
+ <modules>
+ <module fileurl="file://$PROJECT_DIR$/.idea/cdna-generator.iml" filepath="$PROJECT_DIR$/.idea/cdna-generator.iml" />
+ </modules>
+ </component>
+</project>
\ No newline at end of file
diff --git a/.idea/sonarlint/issuestore/index.pb b/.idea/sonarlint/issuestore/index.pb
new file mode 100644
index 0000000..e69de29
diff --git a/.idea/vcs.xml b/.idea/vcs.xml
new file mode 100644
index 0000000..94a25f7
--- /dev/null
+++ b/.idea/vcs.xml
@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<project version="4">
+ <component name="VcsDirectoryMappings">
+ <mapping directory="$PROJECT_DIR$" vcs="Git" />
+ </component>
+</project>
\ No newline at end of file
diff --git a/test_files/copy_number_file.csv b/test_files/copy_number_file.csv
new file mode 100644
index 0000000..6903251
--- /dev/null
+++ b/test_files/copy_number_file.csv
@@ -0,0 +1,6 @@
+ID of transcript, ID of parent transcript, Transcript copy number
+1,1,12
+2,1,11
+3,2,33
+4,3,11
+5,4,55
--
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