Update Project Design authored by Bastian Wagner's avatar Bastian Wagner
......@@ -6,20 +6,20 @@ Simulating cDNA synthesis This is done by reverse transcribing starting from the
**Design**
1. Extract transcritpt_sequences, transcritpt_copy_number, priming_sites and priming_probabilities from input files.
1. Extract transcript_sequences, transcript_copy_number, priming_sites and priming_probabilities from input files.
- transcritpt_sequences = GATGCGG… , AAGCGCGG…, CTCTTGCGG… \[...\]
- transcritpt_copy_number = 100, 40, 30 \[...\]
- transcript_sequences = GATGCGG… , AAGCGCGG…, CTCTTGCGG… \[...\]
- transcript_copy_number = 100, 40, 30 \[...\]
- priming_sites = 220, 260, 390 \[...\]
- priming_probabilities = 0.33, 0.27, 0.40 \[...\]
2. Generate a list of unique_transcripts based on transcritpt_sequences + priming_sites and add the list to the fasta output file.
2. Generate a list of unique_transcripts based on transcript_sequences + priming_sites and add the list to the FASTA output file.
- TTTACGGT…
- CCATACGG…
- CGGGGCG…
3. Generate list of copy numbers for each unique transcript based on priming_probabilities + transcritpt_copy_number
3. Generate list of copy numbers for each unique transcript based on priming_probabilities + transcript_copy_number
- TTTACGGT… 33
- CCATACGG… 27
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