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Update Project Design
authored
Oct 19, 2022
by
Bastian Wagner
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Project-Design.md
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@@ -15,7 +15,7 @@ Simulating cDNA synthesis This is done by reverse transcribing starting from the
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priming_sites = 220, 260, 390
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priming_probabilities = 0.33, 0.27, 0.40
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2.
Generate a list of unique_transcripts based on transcript_sequences + priming_sites and add the list to the FASTA output file. mRNA -> cDNA
2.
Generate a list of unique_transcripts based on transcript_sequences + priming_sites and add the list to the FASTA output file. mRNA -> cDNA
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TTTACGGT…
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CCATACGG…
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@@ -28,7 +28,7 @@ Simulating cDNA synthesis This is done by reverse transcribing starting from the
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CGGGGCG… 40
4.
Iterate 1-3 and extend lists
5.
Write unique_transcripts output file and copy_number_transcripts output file
5.
Write unique_transcripts output
FASTA
file and copy_number_transcripts output
CSV
file
**Open questions:**
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