From 537acfaf810a2c2c06e1ce446c868a098bcbe339 Mon Sep 17 00:00:00 2001
From: baer0006 <max.baer@unibas.ch>
Date: Wed, 21 Dec 2022 10:48:16 +0100
Subject: [PATCH] Write output
---
primingsitepredictor/postprocessing.py | 7 +++++--
1 file changed, 5 insertions(+), 2 deletions(-)
diff --git a/primingsitepredictor/postprocessing.py b/primingsitepredictor/postprocessing.py
index 1168793..c37de93 100644
--- a/primingsitepredictor/postprocessing.py
+++ b/primingsitepredictor/postprocessing.py
@@ -60,7 +60,10 @@ class PostProcessRIBlast():
for index in self.interaction_df.index:
self.output = self.output + str(self.interaction_df[3][index]+'\t' + 'RIBlast' + '\t' + 'Priming_site' + '\t' + self.interaction_df[13][index] + '\t' + self.interaction_df[12][index] + '\t' + '.' + '\t' + '+' + '\t' + '.' + '\t' + f'Interaction_Energy "{self.interaction_df["Normalised_interaction_energy"][index]}"' + '\n')
-
- return(self.output)
+
+ with open('output_transcripts_df.txt', 'w') as f:
+ f.write(self.output)
+
+
#print(PostProcessRIBlast().output)
\ No newline at end of file
--
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