diff --git a/primingsitepredictor/__pycache__/createtranscript.cpython-39.pyc b/primingsitepredictor/__pycache__/createtranscript.cpython-39.pyc new file mode 100644 index 0000000000000000000000000000000000000000..6aff67cb5c1ec297a7001965562d25e5e59e4f7d Binary files /dev/null and b/primingsitepredictor/__pycache__/createtranscript.cpython-39.pyc differ diff --git a/primingsitepredictor/postprocessingmodule.py b/primingsitepredictor/postprocessingmodule.py index b090f86263a6ca2b5a9cce7ed4a63231c94fd40b..84888e5129504d2fbb9dc4d2ebf007164da16458 100644 --- a/primingsitepredictor/postprocessingmodule.py +++ b/primingsitepredictor/postprocessingmodule.py @@ -4,13 +4,11 @@ Created on Wed Nov 16 16:47:20 2022 @author: baerma """ +from createtranscript import CreateTranscript - -with open("RIBlast output example.txt", 'r') as file: - content = file.readlines() - print(content[3:][0].strip(' \n').split(',')[-1].strip('()').split(':')) - #create a instant of each transcript class - + +transcripts = CreateTranscript() +interaction_df = transcripts.generate_interaction_df()