diff --git a/terminal-fragment-selector/__init__.py b/term_frag_sel/__init__.py similarity index 100% rename from terminal-fragment-selector/__init__.py rename to term_frag_sel/__init__.py diff --git a/terminal-fragment-selector/cli.py b/term_frag_sel/cli.py similarity index 100% rename from terminal-fragment-selector/cli.py rename to term_frag_sel/cli.py diff --git a/terminal-fragment-selector/fragmentation.py b/term_frag_sel/fragmentation.py similarity index 100% rename from terminal-fragment-selector/fragmentation.py rename to term_frag_sel/fragmentation.py diff --git a/terminal-fragment-selector/utils.py b/term_frag_sel/utils.py similarity index 100% rename from terminal-fragment-selector/utils.py rename to term_frag_sel/utils.py diff --git a/tests/test_files/50_seqs_50_1000_bp.fasta b/tests/test_files/50_seqs_50_1000_bp.fasta new file mode 100644 index 0000000000000000000000000000000000000000..12e41cdac4403ac3c51f4f76553889346ab56bdf --- /dev/null +++ b/tests/test_files/50_seqs_50_1000_bp.fasta @@ -0,0 +1 @@ +>1|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 481 bp tgagcactcggtgccaagggcggggatacacagatggttggctgatacaaccgggacttaaattccctagactagatctgtgttggaacgcctctctacgagaaggcgaacgaactggcgccgaggcgatcgctaacatcttcgtctcgcttgaaccacacaatggatgattcctccctaggggtttgacaatcaacctggatagcgtttaatatagatggctggttgatttgtaaggccttcacagactactcagagcaataagtgaccccccaacaatcagaggctgatcctctgctccgaaggcagcactcatcatcggtattctgttcgctagaacagatggaatgcatgcgccccgctaagtttgattgagttaaacttattgtcttatagccatagccaaggtatctatggtgtcgtacgtgacagttccgtgtaggcatgccatcccgcctcatgcgtcatgtcatactgaggc >2|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 495 bp ctgaatcaggtgtaggttctttttacgtcgtttaaggagctacacggtatcttgttttcagttaaggtgccacacccccgggtggatcatccgtcagctttcctacaattaggtaactggcgggatcatttagtcttgtattaagacgctcgcgcccggggcggccggcttgtttgtggagagaaacaacaagtctgagtatagattaaatacaactggtttactggcaagtcagcgcgtaacaaccggtgagccgctgcgcatgcttactgcaatgaacatcttggcacgatcctgcgatagcgtgccctgacccgtgcacctcgtcggtgaatttcgtcgaacaagcggatcgccacgccacgtgagatcaagccaaaacacaaaaaccacaggcaatagcgacgctgaagtgtcatttcctacctaaaacttcggttcttcttcttaagagggcattaagtccggataactactgcatggcacctgtgtatg >3|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 193 bp acttcagtactggaaggatctaggaaccattaatgcgagtgtggtgacgccagacgacccccggtgttctgccaccttctttggataggagaaccgtcactcgccccggaggccccacggataagaagggtatcttgtgatcacgcgaatgactcacttgcgtaagtaatctaactttgtttttcgctataaa >4|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 625 bp acgtctggagcgtgggttgacccctgtacatggttctttccggatccttaacgtgccgatacaactcaaaggtaactgtgcttaccacttccgaagctacatgcctctaacaaagtactttcgaggaggcactcaacccccggagatgctttgcgcggaagcagagatcgctgctcaaaatttggaatcactttcgtgcgagacccaaacaatttatggtggattcaagcgaacgagtcatgattacagatctatcaatcgaggagaggacggcttcgccgtttccttttaatgtgaaactagagccttcctcaatagtgaggcccttgcccggtgcccgggattggctcaaaagtaccggctcaggaagtctctcaactgccaagttggttaaagtagcttcggcgtaaggaacccgaccgaccatcagtgtcatacaaggaaatatttccaggaacctagtttatcttgaagttctgaatgagttaggtaatgtcggcccttcatgacagggggacgtgctcgcgagctcaaaccaagggggctaagggcgacggtgcttagtcatctactagatccacccacatgacgattgtgtgggtcctttcagccttttacttctcgc >5|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 845 bp agagcgtacggcgcgcatcgtataccctacgagggcggcgtgtggaggaacgctgggctgacactgtagaagattagatacacttgtccctaaaattaacccttaaccgctattagccgtgaacgcttcctaatatttcaagccgtatagctaagtggagaatgtggagccctggtcaaatcacgagccaattagccctagacggacagcacatctcgtcgcgttaagcggaacactcagcttttattacctagtgctcagcctggtttccatatgctctaaccgaactgatgcatacttgggtctgactaagggccatggttcgcgtcaagcaggccgggttcagaagccctggttgaggggcggatactccagtcgcccgcaggtcgcgatccctgggtttaaactacttcacgacacgtacaaacacttactacctacccctacaacactgagtgaaaagtgctagctaagtatgtccgtcgagataggactcgactttagaggtctgcacgaatgtcctggtaggatgcccaccaaagggaataatccttcgggtacgttttgggcaggtgtgacgtgagaaatccgcacccttatcgccgtaaaggttatttgcggggtgcgtggttacttgagttgtccctctcgagcggggtaacaaaaacctactgtatatctagtctggtccgaaattctttatgctgccgacatgctgcgacccgactacgtgtgtaagagtcattatttcttaatagtttaacaaggctacacccctatatgataaaggctattctccatagtgtaagagtctgttgcaccgacaacccggcgtctggctacat >6|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 703 bp tgcagtcgatgtgctattcgttttaggcagtctacgcgcttagtaactcccacggccatagacttatctcagacatggaccatgtcgatatcggacgccgtcttaccacatttttcatagcccttcataaggcagcgtgctcttactgcccaataaggtggacgattccgaccctaggcgaaccagcgctatagatggaccttctaattgatgcgcaacgtgattgtttccttggtctgggttagcatttcggtagcctaacagtcactccagttcgctaactggcctggatgagggccccatactatatggtgatagcaacgacaccccagtgtattgacctgttgtgtcctggtgatgttgaacgtcaccaagatagtctctatgtgactccatagctaaggagggtgacgtgatgcgccggccccgccccagacactgctacagaaagcttaaggcgagcgtatgaagagcctttgggcatacactctcgtatctagctaggtcaaggtgacggaatgaatctgctatatctagattggcacgcgataatctaggccaattgctggtaaaacacatggtcttattgtatacccaatcccgatttgaatttcctgcaacgaggcagctcgcagaggaacttaagtagagtgaaccctggagccgaatcccagagtcgtcggggacaaagtatatgcaacgg >7|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 243 bp actctttagaatgggtttcactaatagtacgtgcatacaatttcgtcagaaagggcgcttgctaagggacacggatcaatgatgaccagacttatggtgtcaggtctcactatattacatatccggaacccgtgcccgcaccacgcgctgggtctaggcgaccggtgcatcatctccgcgtctctagaggattctctcggtaaatgctgaattgcgtgagatcaaatccgtatgccagtcatg >8|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 863 bp attggcccggtccaggacagagccttatattgctactggtatgagaaccgttctgacgtaaacttgatggctttacgcctgcacgggcttcatacacacatgaccgtggacaaagtcgcccaggccctcgaatagggtgtaatggttaacggttagtgccaccccaatgggtgcgaggcagtaagagtgtcctatggcaaaactctcctcgtttcagaagggtcgctcctctagcctccttatcccccctataatagtactcgccgggtacgagccggagctccctcgagaagtcatcctgctcttaccacaggcagagaacgcgcaaggtttagatactaacttcattcatccaccagctggacaaggaactatagagagatgacattaggttatagctgaggggcgatcccattacccgaggctcgcaatagccttctactctgccaatgatcagtattgtaaacatggctggcgtccctaaatacaaagtcccgctgcaattgatggacttagacgaatcactagcaaagtcgataaatgtttacgctatccaatcccgcggttttaaaggtctgtactatacattcaatacggggggagatgtgtattgagccactagaggtatctaatgggggattgaaaaccgttttatagtcagtctaagcagcgccccttatgtcgctgtgatcggcagggttttttccgagatgtaaggcgaccgatatttcgttcttggcttggaagtagtacccgcgatgacctaccaagtagtccgacccattgatagactatggataccgctcccctccggtcacgaagcaccttagtgaggcatccgccgtgatgtgttgtttggagtg >9|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 494 bp aagcgaaactcctagaacttcccatcaggcaatcgtgtcccacgaagcacggatactacgggcactagttgaatggggggtttttttcgtaggtcgtaataggtactcggatagtcggcccagagttatgcttaagaatgcgctgcttaattcaatgtgactgccgttgtctccgatcagatccaggtgatgattgcgatcgcagcgacatatgtctcgaaagacgtgtcgtgaataagcctgtaagcccaatgcaacatggttccctcaccttgtagctgatgtaccgtgtttcaatctccgcggctatcgatcgccctttcatgcaagctgtaaccagacaggaatctgccctgccatcgttatgtatgcgtattacgactgattcgcgcaggcatcccggctaaggccactgggtataatccacagacattgcacgtcatatagaaaacgacctgtgttcacaatcagcccggggggagtcagagtagtat >10|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 86 bp atcctagcgccaaagatttactgttatggggtcgacgaacactagccgataatgccgtcctgggatctctagcctagtattatgcg >11|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 360 bp cgcctgagggtcctaaatctgacgtatgatcgaagagattggaaggtcccggcgggtcaccccacgttgcgatcatggccaaggccatggtttgctcaaaaatcccacattcgccgtcttacgcgttaggacctcactatcccacagacggtgcgttaccttgtagttgacgcgggatcgtggtgataacagctatttccgagacttcatattcttttacatagcggcttaccgtagtgactccatacattatttgcctattttgtagtgccccgaacagtaaggggaagccaactgccgcggtagctcatagacagacgtggtatacacgctacaaataagcagtggattgagacatga >12|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 140 bp gaattcctggggatttactcacccccgaggcggacaagatttccagctggatcaccgagggttacttaatcccttcgatgctttcaaaggccctaatcagtattgagcaacgaaagcggagtcgttagtgtccaagttgc >13|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 832 bp aatactctcgttgaagcgtcggacagtaaagtgagagatttcggcccacggtagtcggacattctcagtggggagcgaagagttgcgcttagagccgacgtacacgatataacctcaattgaaaatcgctatgtgcatcgttagggcctccggcgtgctgtttcggcagctgagtgtgagggtataacttaccttcgacccgaattgtctcgcggaaatcctaggcaagtaatccacttttggtacgggggagctagttcctctaagacgaacaagtgcactcttcacgtatagtgccctacagttgcgctgttcatggaatccgactaatagaccagtcccgaccccagtgcttcgactgttacaacagttatcgtcgcgcttcgggacgaaatctcggcattactatactcgacatacacagaaagctatggaggtcgccgtaatattcacctcgtcgagtctgtaggcgtagtaaacgttacataatagctaatgggactttcgaacggaacattatactcatcgtgaaacgtttggtcaccacactgtagaatccacctggatcggtgctagttctagtcattatgccctctaatactggtcgcgtagcagggcgcaaggtacagtgcgataccggaataggggtccacacctcacgtccacgtacctatagtcacgccgtatcgaattcattgcactccttttaagtattgagcgacgactggcacccggaatagttagtttgttcggaacgcccccacgcacgagtcgtgcgaattgaatgccgttagaacttggtgcatgcgccgtcgctactattaacggacag >14|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 296 bp atcggggtgcgaaatcccctgagctggttgactacatacgtaaccacgttccgtgcgtcatctaagcgtatcggctcatactggtggtaactagacttggtgaaccctaggtgccggcatatcgaggtccgcatccaaaataactatcgctatagctacatagacatttactcgcaatattacacgaaccgtacgtccctcggtattaacgtaatggttaaagtctctaattccgctgcagagcggcgggataaagacgccggtgtggcctgaatggtggatctgtccgtagtacc >15|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 515 bp accttcaatttgttcgcccgggacaagtagaaattactgtaaactaaacttaacctattccttgttaaagtccgcaccaagtgtactgtaagaatggtcgctcgtaataataacgagaagatcctcgagccgtggtctgctgcaactaccttgagcggtacatcgatgtcccactctgggcggggatcaggggcgagacttgtggtgaggccaaagaatggcgcatatgtaggcaccatacgtcgatacgttccaggagtagaggcctcgaacatacaccacgataagtctacagacgcatagatgacgtggaactcgcatctaacccctggaattctctgactgtcaccctgagccttggtgggccaccgttagggacgtgcaactaccctttctggtgcgaatctcgtttccttagtgccttcacacaaggaggccaattgtttgctaccccatccagacatttgggcattcttgtgagtcccgtaagtcggtcatgatgggtttaagttagt >16|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 820 bp ccggctcaatcctgtagaaccgcgtacaacacacccaagctataccgcacacggcgccttagcaaccactgcttatctgcgtattatacctttacaatcattacatttgatctatctgtgtaccggttttttttgattcaattcgctggattacgacctcccggccaaaaattctcaattcatcgttaacagacgtatttgaagataatcattcaacgtgaactagcacttggtcacttggtacgccaaccaagctgtgctttggggcaaccctttataactcacatgccgtcctaggactttacctagtccacctagcgtgttacagataccgattgcatcaagtcctcgacggaccgcactcgtcgcagttaaaggcaggtctatcagggagataccgtgtgttgcgccaattaatcttagaaaattatgcttgcaatagagcaggaaccctgaaagaatatggttctgtgaaaaagcgtgcactcccgtgtgtgctcgttggttactagcaccgacgttgggtgggcggaggggtcatatgcctgcgccgatcgatatagcgacgctcgtatcaagttgtactgcggcaacacgggtggctcggtgtagaaataaaacgggtgccctcgggtcgaagcgaagcgcaaatgctcgtgggccggagcggccgggggcgggccactatgggcattacaagccagacaggtaagagggagtgctttgatgtgaacagcaccccttccgctggacggggttatgacaagttcgccaagattttacaatatccttaacagtggaatgtccttaccgggtttac >17|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 791 bp attgttagggcctgtccggaaaagatcaacggaagatattcaccagcacctatgctgactcacgtagttcccgacgttcagtcccctccaacgtggaaggtaggacccatctccttaacgggatcgatcggtcttcctgtgaaagttgctcagagtcctcaaggacgtttttgggtgcgtgtacggtatggttatggtacgtgtctgtgacagagggtattcttactggttaagtgacccatatgaccacctgacgcccgagcatagacctgtaggggtcgacgcgagagatggcagcttttgtcatatcatcggttcatgtcaaggttggaggaattcaggcatacacaatctcggcttagtctgcgctgctcctgtccatacctggcacttggagtcaatggattcccaaaaccgacaaatgagtcaacgctctactttttgtttgctggaacgaggcaatatccattgattcccttctcaacaaatgttatcgcggcaggaggacacaccggggccgcccgggcatcgattcgtaaccgcctgaatgtgatacaaccgataatccacttgtaagaaaatgtattctagggacttggcaccgtacggtatagtagctaatctatctaccgctagctcccggcgaaacatctggcggctaacgaccgcacacgtccaagtaattatcggcactgcgatctgagggatcatctcgcggacggagattaactagttaagaatacctatctccatcgcaatgcgactgtagccaatagctatttaaggcgtgt >18|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 328 bp accgattacaggcagtcggccttgtccgctcgtatatccagggatgttccaccgaaagtgggagtgtggcacttattggtaaaaggcatttttacgaacgacactgataggattgatcactcaagaaatgttctcgaccctgaggtaggagtcttaacagacggacatcctccgtagatacgtgagaattaagggacgcatgtcgaaaacgcttggaatctactgtagtggcccaccttacgcttcttccaataactcccttcatagtccggcaacctcggtgggggtttcccttaggcctcggtgattgctagaacctccgcgcaaa >19|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp ggagtggaaaattctgtagtccgttggcggcgaccgcaaaccagaataatatggtcacgttaggccctcgggccccttcatatgtacggagtcattgaattagcattatactaccgttacgcaagaccctatcccatccgcgactgtcaccactgctgtaaggttgcaaggctgtttcaatgtaaagtaggcgaattctgacgtgggctgataacgaatcccccgggttatctagtgcaagtgctatcc >20|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 440 bp atcttaaacagcccaatcggctcgccgaccaatttcccgcttcacagtacgcggaagaatctgcagatagaagtcagccctctcacgtcaataggaatgctgcccgtcatgtttaactactcaagttttaaggtgtcccttatcggttccaggatcatgtctgaaggaagatggtcgcaacgaaatctggagtggcatacatcgttcggtcgaagcataatctcagacgttatctataaagttagggcgctgtatggattgggattcaagctcgaagcctgttcctgccatacagcgccttagttaggatcacgcctgaaacgtcacgacggtgctaagcatcatggggcgtggcccggacgattatccatccgctacttgcgtatggtggtgtcacccaaaatatatgtcgcgaagagtgtccgtgtcatgctaccgag >21|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 840 bp cataactcgtgagtggccctgtacaagtcattgcatcacaatccttgcaatttgctcctttggccaagcgtacaagaccccggacccatacgctcccggctgataaactgctacagcatggtatatccggatgatgcccctgaaaactgcggaagtcaatttgttgatgaatccccgactttccgctgttcctgtggatggtcgaatgccaaatgaagagctgctccccccttctttaatatcaagcactacaaagataaagcctgtttggctgacggcgagccctcccctatcgtacgcaggatagatctggccaagtccgctgacgatggggtccacactgccagaagcgtagatctttgttgagtcggaccggaagagctaacctagctaagggtgtagagttttcaggagcttagagtcatgtcggattatggttggcgttacggacgggctccaaacgatcaaactctagtggccactttcatggccagaacggaaagagcggcgatgtctgccaagtaagaccttcactaccttccgttgattacagacgtcggtttgacagcttggggtcttatccggcgtttcagagaacttttggagcactgagcgcagacaccgacaagcttagctagacagctgaaccgtatcacttttgaaaccagagaaaacgcatagggtggttgaggtaccagaaggtgtggtttctaagttggaaaccacgtacatcactccttagatctccgaaagcgtcttcgcgtgttcggactccacatctatgcgtttactagcaagcggtttctgaccaatatgcctatgatatatcttaggtcggga >22|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 234 bp caccgcgaaagtgactcagttttcccggtcttatcacggtcgttgtcgtccagattccggttgttaactgcgggagctataacacttattccttactgcgacggctgatccactaagaacagttcatagagctcggctatataatttgaagacatagattccacggtacttgtagcccataaccgctgaggaggaacgtccaacggttcgcgcggagcatgtgacgcttaaagg >23|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 917 bp atcaagtgattacctggtaacccgccgctcttgcagtgttcaccctttgtgtcgtcttagtgtttgtacacgttaaggaaaagcgttagcttaaccattacgccccccaaagcccggtgtgtagttatctacatgccgtgtcaaagcggtgactaaatgtttatcaagttctgatgacaacgtgagctcttaaagccattgactagtataagcacggaacaatgataccaggcaagcttgaatataggataaggcctctaagctcgaagcggatcttacggaggtgtgaatcaacagcactcgagtagtacaccgtggatggttagtgaagttggtggtaaaagagtaaagggttctaacaccttaacaatgcgctacacttcaccatagccgagagtcagtatgtggtaccgttagttctttcaatcccaagagcgcataactgcttgccgccgcttagtttagggacattaatgtatatgatgaggggatgctcccttcattcggaccgaccccgacacatcgtatcctaatggctaaccgctcgcagccccctgcctgcatgcggtccgccgagcagtcgaccaagcactgtgaaagaatttgggaaatcgaacccagactaccggaacttaactcacgaccttcgatcttctgatcccagtttccatacttatatatactgcgcgaactgcagcggactttcctccggcccagcctatcgagctttgcgattgtattcgaggggcgtcggtatcttttatccaacagctgtcatcagttcggaccggggggataaaagcgccagactggatctggggtggtgtcaaccatgtgagtcaatcgtccccgagtgccgagggcctagggttcctacatggtgggtgctcctgtcgaaagaatcgagtgacgactcg >24|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 676 bp cacacggcatcgcaaagcgagctatccagagatgatacatgtggttgaaggtgattgcgtcaacatgggggttgctcagtttggttggtcaatcaacggtggcagaccatgcgataacgatgatggtaagactgtaaggtaagttaaatactctcgtctgccagttgggtcgtcaacgctgcagagacgccattcttcccagaaggtccgagctttctacagtgccgcggcgtcatgaccaaaggggtccaacctcgcagtaaaatgtctatgcttctggtttggaatgagaccgggccatcccgtgataaagagcttcatttatcagggaaagcgtcgcgtagctctagaatttatttatcttgagtcaaatgccatcatctaatgaatccactgagctggtaaggcctaggcaggcacggaggactttatagtccacgaattcgggcatccgcattatcttgttcgtccgcacttaacgactccatacccgaccctgttactctatcgagtacactacggttaaccgggcgtcattgtccacaggttcacagcaacattgggcgaagaggagtgctaactaagcgccatgccccattctaagtttacaacaaagtatttccaagcggacggtccgtgtttcagcctcatcttgcccccctggacattccgatgg >25|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 870 bp ctgatcaccaatagcttgcgcttaacacacgcgccttacaattatatgacgcccttgccaatgacagatagagccattaatcgtggaaaccaggcatttatacttgtccgatgtatcgattctcctctatctacagagcccggacatgcgaaatatcaaaattccatgtatactgaataaatacattgggcaagccgggctcatgcagcaatcccagcgttgccttacgcaaagatatcttacggagttgcctttagattaacagcacgtgttcaaaaacctagccaactctgtcggtctagggcggaacgaagtagccagagtcgccccacgcagttcacgattacagtaatccccttatggttggggcatcgggaaattaaccctaagatgcgccccttgagcgccgaaaagggatcagttcagagtttccccccattcattgcaaggcactgttcaggcgctaacatgaggcccaaaaactagctggttacttcctgcgtcgcgcaactgttcatgtgttctttccgtacctgtgccaaagtccatgttgaggtacacccttgggtgtgttagaaagtggcttgccctcatagctgctatgggaaatttgagttgcgaccgtcgggcctcagggcgccaggtttggctagtaggcggcgtcttgtgctgcgtcaactgcgaaatgatgtccggtaggcttttatgggtcgttgcggccatgcaagagcatgcggccggttgtcggttacagagtcttagatactgtcaaactcgtacacaataaagagaggtactaatgaatcatgggcagcgcgttcatagtatgtgaaacttggcaatcagtgcacggttggccccacggtccta >26|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 751 bp gggtgcgttatggggactaaagactgttactaccggtactccgccttatagagccgtcacgtattaatcagctatcaacagatactatcgtcacagccctccttctggcgaaggatctgagcatttgcaaagctataagttggtacgcaacggtagagggcttcgtagtcggggaaagggcttgcagtagtataggccgtaacttatctgttgcaacctcaaccgcacgaatcgattactctataactgccctcaatacagtatggttaccagtcaccttcacactgaagattaattcgcctacagaaggagaacatctaggtctccgtagaatagcagtcgtgacaacacgccgaaacttgaggcaagctcaggcgtgtgtagcgagctttcagcttaggcgggcattacctaattgttacggaccccccaaaaattgtcgactggtttcttctatgcgactataaaacaggaataggaaagtgggtgcatgcaacttgttcgtgtaccgttatgatcgattcctatgtgggagtttgcgcccacctcgtctgtgctgtcccggcgtactgcaccacgctgatttatcttgtagtaaggatggggtcaatacgagggctgaggcgtagagcccgacgggaaacacattcgtcacgccgcaaatcgcgtcgtcctcagacctcagcaagaccttttggtcagaatatggcggggctctaattgcctttacttccactccgtgaacttccgc >27|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 574 bp gtactgcaccttgcactgctatctacaatgccgagggtcgccctagtgctttgcatgtttggcctctacctacgagtctacgcgggcgtttttaagcaagctacgatcatcttgatccaagggtacgaggccccgcagaccaatggaggtcgtgaccaccctcgtgtatgcctcgcactaagcgagcattctggtatactgtctctctcctgtgataataacagtcggctcgatattcagttcacatgaaacagtatgttatataggtgggatggttataacacggaaaggtgaaaaagagtgcggaagttacttaggagtgccgtccttgatcaagcatgcgtagcaacaagcgcccgtaacaaccggatggaggttctgggtgaacaagggcgcccctacaggatatacaggacttgccctatggtccatttatagtatggtggtataccccggctcacctgtgaattagattgcgaaccaaataaaggatcatcgggttcacatttaggttagagccctcatacgttaacctgccggtacaccacttctttcgccgccgcatagtacatgc >28|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 169 bp agctccctaaacaacacccgcgtaaaaccttcagttatggtgccgactaaccctgtggatgtcttagcgctctcgttccgatgggtgctgatactagtaaatgagactcgagaccgagaacacgcaacggctacaacctggtcggttgttggggtttttataatcagtg >29|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 408 bp tgcagtgatgcatcgataagaccgcatagttacctccttacaggtgacgctaggctaattgggagtgctggcacttgtgccctacagtcaagcgctcacgcggtgttctcctcccgcaatcttagatattaggctctgtaccgcacgaaggatgaattttcttgactattggtccctgtttacgagggcttacctagagtgaggatgaacataaacaaggcctacttgacttaaggcttccaaatcacttgagggcaaatgactcctcaaacgcgagtgccagtactatccgtgagggaagaaaatctgccaaaaggccttggccgagatagattccgccgcccagcttacggggcatggtctataagttccgttttagcatgtactgtcaacaagcctgcgggatcc >30|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 52 bp caaagcgattcgggttaacgcacttaagagttcgacgtaggttagtcccctc >31|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 581 bp tgctctgacgtgtaagcgccttcgataacgtctttgcagcgccccacaaagtaaggaccggtctaacagggcttccgaatcaatagactgatagtaatgggatcctgaggctgggacccgacacacggcatattttactagaaacgctgatttaaactccaattatccttgacgcactgagccacagtcttagacgcagaatgtccgcaggagccctgtctttcccctaaatcattcgcggcatttgtttacgggttaagtcctgcggatcctagagtctgggccccgtacaaccaggaagagactgatactccgcgtattacggcccataagaacggtgggcctcgtttgtatttgactactgtacactcctgcctactgctgaacttaatgatgcgagatgaaagtcacagggggtgtagatcaagttgcacttaggtttcttccgatagattactatgcaagctatccacatgtgagaagctatagccacctctcttaacttctggtaagggcgcattgcggagcggcgagtacatatggtcttaatggacgccggtcgccgtccagatggagatagc >32|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp gcggaactacctctctaagaccgcacaacaagtgtagtagatgaagatcacgcagagtgctcggcactgcatttttatacgtcgaatcagaaacgaggttcctcctctaggcttgttaaaaatccgggcgcgatgggctggtaatctgtggccatgggagcctcgccatttaaagattttggttaaggctcctctgttgtgtccatcacccttgaacgagcccgtacaaaccgtgtacgatgttgacac >33|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 297 bp gccctcgcgccagcttacttttagaaaacatcgaccggtaagagatacctgggtgagctgggcttcacgacatgttcttaaatcaatactctaaatctgctttgtagcatgcctcaagtaaaaaaatgtgctggttccgcacaggtgtgacgattaacgttgcgcccgtttgcgtcagtccagatcaccgatcttccacaccaccggtgggctgccggactgcaggtaatgactcctggctgcattctctgacataaaggttgaatagaacggcgtccttgagaaggttatggaacg >34|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 573 bp gcctaggggtcttgaccacagggagtacgagcattgatcattggagcaggtggctaatattgatagtggttagaccaccggcgcatcatcgtacgagcgcgggcgatacgtgtctttcaccggcgcactaatcttatcttacttctcaagccccgacagcatgtacgccaagtgttgttctgatgaaactttcgaaatagcaactgttagtcagttatagttggggagggcagtgaatacctcaaatacacccaagaaataacttcgaagcggcgcctatatcacacccctgtttcttatgactggtttgcgtgtgctaacagcaatcaagtacctgaccgtatgtccttgaagcttgaggatagtacccggatccagaggactgaaaaccgtgtctacgctgttctcacgccgatgtttgaaataatgagtgtagcgtctgccaaactggcttaagcactcagcgtgaggcgagattctatggccttgcgttttcgtttcgcgcgaacggtgacaatccagaaccccgaccttaaatatgcgacgtaaccctcctggccccgtccgagtgaa >35|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 559 bp gaaaaagtcgccccattcagttacaatcgtcttcagaagccagctcggttggggctatctgcggggtaatgcaacagggggctaccagacggtaaaccagggtcttgctattggtgttacgaaacaaaggagctatgcgacctcattagatcgagattactctcacaggcagctccggccatagcacaactaatttcgggtgtggagctcaccacaggaacatcttgtgcgtcctttgttatttaattgtgcattgtaatgcaccggaccccgggaacatacagccattatctgtgttgccgctcatccgttgtacttcttaatacaatcagaattgtactcaaccgattgccaagcacgtacgcgtcagatacacatccggagtcagtcctcgtcctgctttgactcatgccaaggagtgcgcttcgcgcgggtgaatctcgttatcgatttatagtatttatcttatcgcggaagaccacgctagtagactgggtaacgtcgcgattgtcccaaagccagagtgaagataggcgacatcctctgtgagaggggtacc >36|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 187 bp ctaagtccttatctatgatgcatctttcgttactgcgacaatatccgagacgagcagagttacacgccgaggtgtaaacgaatacgattgctatatgcaacgagttggttacacgcgtgaaggcgaatgtggatgctgcacttggagtcccattttaccggccgcacgtgctagctcactcaccttg >37|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 549 bp ttcatatggggatttggaatcgggtttgtgcggaatatgcccacgagactgcttatgtcaacgagacgacccattgtcacgttgtaaggccaccaataacacacaggtcttcgtttgctgtctcagggcaatcgcatcgacaacatcgtatggataccgttttttatcagcttacggcgcatcatactaataaggtgtttgagagggcgcagactcgaagcagtgtgatcttcccggttcgaagatgcaaaaacggtcctatttcgatccaaaactcagcgcactagtccaatgcttttttggagggttttgtagaacaatcgaggcgcggagcagcgaaatagaaaacgggccagtgaacgacggatccacacggaggtttcactcgaggacgtgtgccccaacaaccggttatctccttacttattcaagtgtgcctgcacctcgataagtctaaactccgcctatcccagcgtaggtcatagtcgtaactcccaacaggtgccctgcgacttgttcctcgccggtgctgcaagaaggtagtgttct >38|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 916 bp gtggcctaccataaatcaatttgggttaacgctctttgatctacgcactatgttgattcacttaccccttgtcaccgggcagaagagagccagtttaggtgtggttgtatttgccaaaccgcaaaccgcctaatgagctggatccggccatggaattaatcccgtcgtttgactcgaggtgttcaaagactgtgcaacacgacgtgcattcatcactagaacttaatctagaccaggccttgtggccaggagaggcgacgtgatattgccctatacacagataattatatacccctcgcgcgcaaaccatctcggtctctttccaaggtgccagcacgcgataactcgtatctgggctggatgtgcgtttcccttagcccactcccccttttaagtactagcgtactcgggttctacggagtgcatggagtttccacaaagggacgcaacataatttaaagaaccgagccttacgaggagcttttgcaggcttccgtcgctatccgtcgtcatggagtgaggctttgaggaacgagcacttgggactctatataccccggagtaagtatctacagccggggtctgacgccaaccatttgttactttgttgcgagggctactcccgctagtagtagaactgctgtcaggcaacgacactaattaagtggccttgacccgtacgacttgagaatcttcggttcaatattccccgtctcgaaaggctgcttcaagtgcgctacacattacatacaactaggcgggagggctccaaaccggcggagctacaaggagtctaatagtgcgaaaaaagggccgcgcgacaaatgagtctggtgtggcattcggaacgagtgggaacgatccgaatccgctttgacaattaaccgtcctaattaggatttcgtgaatagtagtg >39|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 848 bp accccggtcgctttggccggtcgtagccctaatcaattctgttcgtatcactaaagtaacggtttgaaatcctttgcaaacttgatctgggtatatgaaccggtatgcggggatagtggtaaataagtagtttacgagctgagcgtggattatcccagagaagttgccttaggtccagagcccgcacctacaatcactcgaggccggtcgagcgttgcgtggcaaggaaacccagccggtcaccctaccctcaaactcacgtcattgatccaatcatacatggcgtctctcacggtggtgttgtttgctgtttcttgcggcccgtttattcgtgaacacgacgcaagccctaccgacctcgctagccgatctagacgactgggtgggttacccttcccagaggagtgactatggatatgtagtccttataggcatccagggcaccggatgcactagtcacacccctgctcagatagcgccaaaaagtgaattcaagcgttcagctggacacccattaaacacgagtgctactgggcttacataatacgagagaagattggccgattgttgcccttagaacttatgtgaggtaagtctgagacgccgattgcggcctagacattagtaaaaataagataagaactactcccactgactcgttcgggcctcctagagctagggcccccctgagcatgttcagttatatcctacgggctagcgtaaggttttttcgtttatgcgaggcttgagacgcgacatacgagcattccgttgctggggcgatagaccacgatacgctcagaagagggaatactaaattgataaaatgctttcattgtctagcacct >40|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 289 bp agagcaaaagaaagtctgctccgcgtgacacacttgctcgttgtagtaactgcacgcgccgtctactcgacagggaccccccgtcggttcctctctatagcaatcgcggaagtggttccctgcctcccgcgcagaagttcaaactagtaatccttaatgacttgtggggggggagatcagtttcttccacaatggagtaaacttatgcgagaatcaagatcgcagaggccattttttgatgatactgtcagatatgtggttagccgtatcacgttaccgacgcagaatt >41|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 642 bp ctggggaatgaccgtaccgatctaattccccgtcgaaaaacttatgacgcgcagttgtccttatgcttgagacatgaatccttgccccatattggcgatcttggccaatgagatctgtcgaaagtactggaggccggtaaattgggggctctagaggtccgcccctgaaggactaacgtgtgtgtgtgtctacgtgtcgggttatcagcgtgttggacgatggccgtggattcaacgcatgctagagagctaatgatcctccgaagtcaaaagcctcagtgcttcgatttatgagcgcgtggcgagtacgtctagtgatactctaactactataaacaaggcctcgtcgcagaatccttcaatacattgggccccgggagataagtcggaccaggactaaattacacatgggggccctaaccctaggtcttaacggatggcttgataaagcacgcgctaatcttccctatcgtgcacatatctcttgctaccccctgctaaatcgctcgggccttggcctacacaatatgcaactggaagtgtggtttcgcaagggtataaataactgaactgtgaagttcccctgttacaaagccattagccgctaatgaacatagacctaacggactcgctccttgtgct >42|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 993 bp gcaagaagccaaaaaccttgcaggaggtcatttaagtttacccgcgcataagcagagacggacctctctgagatctcgcaccgcgcgcccggccggcactatcgatgctagactagggttggtgactagcccgtcaaaaccagcctaaacgcaaagattgtaggcgctagtccggaactgactgcttcgtgtcggtgggagcctagtatgtttccgggtctatgacccctaaaatcatagacgtgtcttaatagctatacctgacttactttgaagtacttgccacgacgagtttatgagatattagtattctcagccttgtgctcctcctacgaccgggatgagtcatctggtcaccttgatccgtacggaactatagatagtcacttcgaggcatgcgcgtttggacacctactgcttctaagtcatagcgctcgcgtaatgcagcctcgcatgttctttacacgacacgagggattttgattgttataggtgaacgtacagacaaaatcactgtttcagaatacttggcttgtacgatctccagtactccccgtgccggctcggcgaacgggataagacatccacggcattctgtagtggttgaccgggtttgacagactcccttatctggatggggcccgataacgatgagcatagaaccgttgtaagtctcgattgtcacccgaggacaaaattttctcatcctaggttcactcagcgtcgttagagcatcagagttccgtctttaggttactttaaagatcgaaagaaaccttcgtgctggtaggaagtctcatataagtagccagcgtggaccgaggaatagattgttatgttgcatgtacttctgggatcgtgtccagccaacttcaccgcggcacacgtcgatggacccaggaaatgcctcggggtcagaatgagccttgtgcggcccgactgctgaacgacgtataaaatagagcgtcgtggaccccatacaacgcacataac >43|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 473 bp ggttgtccaggcgcgagcaagtagctgactcgctaatcttaacgagtattgcttaggacttccaaatactccaagacgtcaatacgctttatctttgtgaagtcatcccggaccgagcgcttgggtcgtgatttaaaatcccctgtgatgtggctacaggtgcggcctatacagccgagaagaaggccgtctttaggcgtccaatgaaccgttacagggacacaccaaactgcgccaactgatcccacgggtcacggtacgctctaagaccagtcgggattctgacttaacatcgcagcatctgatcgagtggcttctccagcgagcctagggcattacaccgtgcgttcgcaaactctgtatgcttgtcggaaggtatagcttgagcccctttggttcatatcgttaatacttaagtaagtggggtcaatctttttgaactaatcaaatgactcactggcgaaaggcagacg >44|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 272 bp gtagaacttgttccccatggacaatgctagttccgttaatgccaggtattcatgtgccaagcgcctgcctggggaatacgagcctctctacaaacttacggccaccatgcttaaagattcggtgacttcactaatgacctatacaagtaatgcggaggacgctgtcgcttattgctctttgctaaggccagttatgtccgtcagtcaacgatacgctgcggcggtgggtgacggcactagaccggaagcctgatgacaagttcgaatcaata >45|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 860 bp aaaagcatcactctaacgacgctaccgtctgaatagatcaagattgctatcggttcgaccttgatcgcatgtgaacccgcccaaaaacccgtctcgacaaaagttacgtcgcatgggctgcgccaccggatagctcctagcttatcttataaatcaggtagagctacaacatggtgctatgacaactggagtgtcatcgctttggcgaaaccgtaaagggtgggaattgctgcattctcaactgggccgaactattccgcattcggctgctcacaaatcgtggaatgtgtccttgaacgtcctgcttaaccatggtcattgccacgaaggccctggtcggttcagaagtgtatcagacttacaagggtccgaggaggttccggcggggggagaacaagcatcgaacacgactcactgacctgtaggggtattacctatcactgtgacccacatctgaggtactggtccattccataaagatcgagtcgtcttcctaaactgggcactcatacgtacaggaccaaaaaagaggttggttggtgaccgtgccacgcctggcggtcagaatgagttaatgggtcgaataggcgatcttgataacaatagagattcacaacgtgggctcaagccgcttcctgcgaccactattagcgaactagggctatcgccacggaaaagtacttctaacatatacccctatggagtttcagtgtgaagccactgagcagtggcgaggttgtcgcgtcttttgttcaattgttccctgtactttaatgttcgtatcggatttgctttccgttgatagcgaatctctaccctgtcgctgtgtctagcatccgtccgcgaagccggtgacacat >46|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 884 bp aagcctctacaggctctgcggtttggctttacttaacggtgagtcaggaaaacattactgctacgttcaccgtgttcagagatagagagtacattagggaccaatcacaacgttcgccagggcaccgcctaatccgcgttgttagcaagagtacaggctctcgtatactttcagacccttcaatactagacgacaaattgcagcccggggtcatcggtcgactcagatacgtgctaacgagtaccaggtctaccgttgcaacgttggatgcgttatactcggcataaggcgatgccctttgacatactgcactacgctttggcgatagcgctacagttgatgaccgggctaactgcacgcgcgcgtagacgggagcccaattttttgaaattggcgacgaccgacttacgcacctatgcctcgcacgaccagtagctgtaagctctggtcgttggcattagattggcgaaccgctgaccacgatttaagccttccaaatcgttctactatacgagctcagcgtggcggtatgctagttgataaagtaaggacgttctcccgggtccagaagcccgatccacttttaaaagggctgatgcataaactaagactgtatgtctggttcaagtcttcagtaacttcagcctatgtttccaagtgacaacttggagaggggatgctgcggattctgatctaagctgttatatatctgttatcacctcgaaactatcactctggatgaccctcctatgtgcgctcagcgtagaccttccgctgtactttcataaacatagcatggagtgactcagaagagctttaaaggcgggagatcataggtcgcggtcgagcgaatgggaccgaggggaatgccaccaattcccgct >47|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 888 bp gcgccttgaagaggcgaggtctaaaggcaaaaatttagatccgccctatgagacggccgacgcggagaattccctaaccactattgtcctctgcatcgatatcaggaataggcttacctgcaatctcttatggtgatagactgtttgggagctgaacctgagacgcgcacgaaatttggaaggatcaaataggccccgcagtctctggtagacttctgccgagcggactagcttggctaaggtgtacaagcctaaatcgtttttcacatcaattttatagctgattatagaggaacgacgcgatcgtgcagagtgatggtcaaagggtcggtacgtcggatgcccagaaatatggtctgaggggtagcctgttcagaggcgcttaacttgctccttgctcacaggagcgatatgcgctagggttctggacgatcgaccatcattgtaacccatccaatccgtccttattgatggcccactcccgcatgctggtccgaaggcgatcccgatatcccgagcactagaattcgacacagtctgtaccgtgcctaattcttatcagaccctttatgcccgtctcggccttagagttaaatggactatctccacggaatgggcagtgcatcgctaccaagggtcgcccgatcccggggtttccacttcggatcatttttgtggatagtacatatcccacttcaacaagatagcaaaagtccaagacgcagtagagcacgtttctcaaacaacggaccatgcacggttcccggtaacccagtccagggaacaatttgtggttcttctttgaactagttgggagcaacagactcaggggctggccagtagtattgaaccaagcgttttttacaattactttgctggcgctaactg >48|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 588 bp catcaagatgggttacgtaggaccgagattcagtctctgggttagagccgacagcggggccgctacatagtacacggcgaggaatgcggggttgggctgaaccgtacacagtgggctagctgcggtacctgccaccggcatgcgtttaaatcctttcctttggcgaagccaactgccgacgtccgcaacagagactcgttttccgaccccgttactaaatcagctaactggcgcctgaatcctcttacgtcggatgttaattagtgtatagaatatcggagggttgagtgcgacgcgcttcctgttctccgctacttcttgtattatgatttggtcaaatacagtcgacaatagtgctcgacaggatataacgctatggcaccccatagtatcagctaaacgttcatatcctagtagcttagaaagaaatttaatatgcagtggagcctggaaccttacttattgtcggctcatcccgcaatactcgcaaataatcacgcatggtgccggacggtacgggccacgtcaattaggtaaacgaaacacgttacgtggactgctcacccaaccttgagggactgtctactt >49|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 626 bp taacctcagtctcgttcccccctcggtagttcggacccttattcgcttatctcacattcatcactgtagaccaaggaccgggcatacttgcggatatctaccaggactaggcacttagggatacgctgttgaatacgggtttcgtcccgtgtactcaagtgtagtttaagataggtacgagtgctagtacatcgtacaatttacaactgacttaaacgagagtttattatgtcttgttcacttgttgacacgcctgggaaaataataaaaggcaacgtctaatctcagacccgttgattaactaagcagcgtgacgtggagtcatacctgctatatttgggaggtgggaagtattggtgaaccgagcccctcctagccgtggcggtaatgacattaagaaggcgcagttagtcagcactcgaggcaggtgcgcctctgcacgtctgctgatatcgtcggaacgagttaacgctcccgcccacccatcagtcagggaccactttcgacacctagttcgagatttctcctttcggtaaaatcgggctcaattaaggcttgggtaccccggccagggaatatgcacatgagggaactatgagactgcacctaccccgcacggatggagg >50|random sequence|A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 214 bp taactgtcggtcactgctcatcccgactagttcggctcactagacttactcgcggaagcgagaagtaggacgtcgtgtaatactccaacgtcgttacgcaatgttgtaaaacttcatcgcattccgtgcatggcctaaacgtgcagcattatataacgctctttggtcttaatatccatcgcgggagtaacgcgaaggggagacgtgtgcctga \ No newline at end of file diff --git a/tests/test_files/test.fasta b/tests/test_files/test.fasta new file mode 100644 index 0000000000000000000000000000000000000000..893924437a24949b80941e7790cddce7ddced812 --- /dev/null +++ b/tests/test_files/test.fasta @@ -0,0 +1,150 @@ +>1 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 481 bp +tgagcactcggtgccaagggcggggatacacagatggttggctgatacaaccgggactta +aattccctagactagatctgtgttggaacgcctctctacg +>2 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 495 bp +ctgaatcaggtgtaggttctttttacgtcgtttaaggagctacacggtatcttgttttca +gttaaggtgccacacccccgggtggatcatccgtcagctt +>3 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 193 bp +acttcagtactggaaggatctaggaaccattaatgcgagtgtggtgacgccagacgaccc +ccggtgttctgccaccttctttggataggagaaccgtcac +>4 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 625 bp +acgtctggagcgtgggttgacccctgtacatggttctttccggatccttaacgtgccgat +acaactcaaaggtaactgtgcttaccacttccgaagctac +>5 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 845 bp +agagcgtacggcgcgcatcgtataccctacgagggcggcgtgtggaggaacgctgggctg +acactgtagaagattagatacacttgtccctaaaattaac +>6 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 703 bp +tgcagtcgatgtgctattcgttttaggcagtctacgcgcttagtaactcccacggccata +gacttatctcagacatggaccatgtcgatatcggacgccg +>7 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 243 bp +actctttagaatgggtttcactaatagtacgtgcatacaatttcgtcagaaagggcgctt +gctaagggacacggatcaatgatgaccagacttatggtgt +>8 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 863 bp +attggcccggtccaggacagagccttatattgctactggtatgagaaccgttctgacgta +aacttgatggctttacgcctgcacgggcttcatacacaca +>9 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 494 bp +aagcgaaactcctagaacttcccatcaggcaatcgtgtcccacgaagcacggatactacg +ggcactagttgaatggggggtttttttcgtaggtcgtaat +>10 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 86 bp +atcctagcgccaaagatttactgttatggggtcgacgaacactagccgataatgccgtcc +tgggatctctagcctagtattatgcgTCTTCGGAGCAGGG +>11 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 360 bp +cgcctgagggtcctaaatctgacgtatgatcgaagagattggaaggtcccggcgggtcac +cccacgttgcgatcatggccaaggccatggtttgctcaaa +>12 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 140 bp +gaattcctggggatttactcacccccgaggcggacaagatttccagctggatcaccgagg +gttacttaatcccttcgatgctttcaaaggccctaatcag +>13 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 832 bp +aatactctcgttgaagcgtcggacagtaaagtgagagatttcggcccacggtagtcggac +attctcagtggggagcgaagagttgcgcttagagccgacg +>14 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 296 bp +atcggggtgcgaaatcccctgagctggttgactacatacgtaaccacgttccgtgcgtca +tctaagcgtatcggctcatactggtggtaactagacttgg +>15 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 515 bp +accttcaatttgttcgcccgggacaagtagaaattactgtaaactaaacttaacctattc +cttgttaaagtccgcaccaagtgtactgtaagaatggtcg +>16 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 820 bp +ccggctcaatcctgtagaaccgcgtacaacacacccaagctataccgcacacggcgcctt +agcaaccactgcttatctgcgtattatacctttacaatca +>17 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 791 bp +attgttagggcctgtccggaaaagatcaacggaagatattcaccagcacctatgctgact +cacgtagttcccgacgttcagtcccctccaacgtggaagg +>18 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 328 bp +accgattacaggcagtcggccttgtccgctcgtatatccagggatgttccaccgaaagtg +ggagtgtggcacttattggtaaaaggcatttttacgaacg +>19 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp +ggagtggaaaattctgtagtccgttggcggcgaccgcaaaccagaataatatggtcacgt +taggccctcgggccccttcatatgtacggagtcattgaat +>20 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 440 bp +atcttaaacagcccaatcggctcgccgaccaatttcccgcttcacagtacgcggaagaat +ctgcagatagaagtcagccctctcacgtcaataggaatgc +>21 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 840 bp +cataactcgtgagtggccctgtacaagtcattgcatcacaatccttgcaatttgctcctt +tggccaagcgtacaagaccccggacccatacgctcccggc +>22 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 234 bp +caccgcgaaagtgactcagttttcccggtcttatcacggtcgttgtcgtccagattccgg +ttgttaactgcgggagctataacacttattccttactgcg +>23 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 917 bp +atcaagtgattacctggtaacccgccgctcttgcagtgttcaccctttgtgtcgtcttag +tgtttgtacacgttaaggaaaagcgttagcttaaccatta +>24 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 676 bp +cacacggcatcgcaaagcgagctatccagagatgatacatgtggttgaaggtgattgcgt +caacatgggggttgctcagtttggttggtcaatcaacggt +>25 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 870 bp +ctgatcaccaatagcttgcgcttaacacacgcgccttacaattatatgacgcccttgcca +atgacagatagagccattaatcgtggaaaccaggcattta +>26 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 751 bp +gggtgcgttatggggactaaagactgttactaccggtactccgccttatagagccgtcac +gtattaatcagctatcaacagatactatcgtcacagccct +>27 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 574 bp +gtactgcaccttgcactgctatctacaatgccgagggtcgccctagtgctttgcatgttt +ggcctctacctacgagtctacgcgggcgtttttaagcaag +>28 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 169 bp +agctccctaaacaacacccgcgtaaaaccttcagttatggtgccgactaaccctgtggat +gtcttagcgctctcgttccgatgggtgctgatactagtaa +>29 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 408 bp +tgcagtgatgcatcgataagaccgcatagttacctccttacaggtgacgctaggctaatt +gggagtgctggcacttgtgccctacagtcaagcgctcacg +>30 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 52 bp +caaagcgattcgggttaacgcacttaagagttcgacgtaggttagtcccctcCTTTTAGG +TGTCTAACTAGAGAGGCGCCCTATTGGGCTCAGGATGACG +>31 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 581 bp +tgctctgacgtgtaagcgccttcgataacgtctttgcagcgccccacaaagtaaggaccg +gtctaacagggcttccgaatcaatagactgatagtaatgg +>32 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 249 bp +gcggaactacctctctaagaccgcacaacaagtgtagtagatgaagatcacgcagagtgc +tcggcactgcatttttatacgtcgaatcagaaacgaggtt +>33 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 297 bp +gccctcgcgccagcttacttttagaaaacatcgaccggtaagagatacctgggtgagctg +ggcttcacgacatgttcttaaatcaatactctaaatctgc +>34 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 573 bp +gcctaggggtcttgaccacagggagtacgagcattgatcattggagcaggtggctaatat +tgatagtggttagaccaccggcgcatcatcgtacgagcgc +>35 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 559 bp +gaaaaagtcgccccattcagttacaatcgtcttcagaagccagctcggttggggctatct +gcggggtaatgcaacagggggctaccagacggtaaaccag +>36 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 187 bp +ctaagtccttatctatgatgcatctttcgttactgcgacaatatccgagacgagcagagt +tacacgccgaggtgtaaacgaatacgattgctatatgcaa +>37 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 549 bp +ttcatatggggatttggaatcgggtttgtgcggaatatgcccacgagactgcttatgtca +acgagacgacccattgtcacgttgtaaggccaccaataac +>38 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 916 bp +gtggcctaccataaatcaatttgggttaacgctctttgatctacgcactatgttgattca +cttaccccttgtcaccgggcagaagagagccagtttaggt +>39 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 848 bp +accccggtcgctttggccggtcgtagccctaatcaattctgttcgtatcactaaagtaac +ggtttgaaatcctttgcaaacttgatctgggtatatgaac +>40 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 289 bp +agagcaaaagaaagtctgctccgcgtgacacacttgctcgttgtagtaactgcacgcgcc +gtctactcgacagggaccccccgtcggttcctctctatag +>41 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 642 bp +ctggggaatgaccgtaccgatctaattccccgtcgaaaaacttatgacgcgcagttgtcc +ttatgcttgagacatgaatccttgccccatattggcgatc +>42 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 993 bp +gcaagaagccaaaaaccttgcaggaggtcatttaagtttacccgcgcataagcagagacg +gacctctctgagatctcgcaccgcgcgcccggccggcact +>43 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 473 bp +ggttgtccaggcgcgagcaagtagctgactcgctaatcttaacgagtattgcttaggact +tccaaatactccaagacgtcaatacgctttatctttgtga +>44 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 272 bp +gtagaacttgttccccatggacaatgctagttccgttaatgccaggtattcatgtgccaa +gcgcctgcctggggaatacgagcctctctacaaacttacg +>45 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 860 bp +aaaagcatcactctaacgacgctaccgtctgaatagatcaagattgctatcggttcgacc +ttgatcgcatgtgaacccgcccaaaaacccgtctcgacaa +>46 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 884 bp +aagcctctacaggctctgcggtttggctttacttaacggtgagtcaggaaaacattactg +ctacgttcaccgtgttcagagatagagagtacattaggga +>47 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 888 bp +gcgccttgaagaggcgaggtctaaaggcaaaaatttagatccgccctatgagacggccga +cgcggagaattccctaaccactattgtcctctgcatcgat +>48 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 588 bp +catcaagatgggttacgtaggaccgagattcagtctctgggttagagccgacagcggggc +cgctacatagtacacggcgaggaatgcggggttgggctga +>49 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 626 bp +taacctcagtctcgttcccccctcggtagttcggacccttattcgcttatctcacattca +tcactgtagaccaaggaccgggcatacttgcggatatcta +>50 |A: 0.25|C: 0.25|G: 0.25|T: 0.25|length: 214 bp +taactgtcggtcactgctcatcccgactagttcggctcactagacttactcgcggaagcg +agaagtaggacgtcgtgtaatactccaacgtcgttacgca diff --git a/tests/test_utils.py b/tests/test_utils.py new file mode 100644 index 0000000000000000000000000000000000000000..3d0cad170a49f9cd2b22c1e428c292acd3bcc1ba --- /dev/null +++ b/tests/test_utils.py @@ -0,0 +1,4 @@ +"""Test utils.py functions.""" +import pytest + +from