Running with gitlab-runner 14.6.0 (5316d4ac)
  on zavolan-group-ci-shared-runner 2xM8DJPt
section_start:1671617740:prepare_executor
Preparing the "docker" executor
Using Docker executor with image python:3.10-slim-buster ...
Pulling docker image python:3.10-slim-buster ...
Using docker image sha256:abe91ea92d3a872c530d42e6b9f7410e531eb835399328e98ecf8949bb39dd66 for python:3.10-slim-buster with digest python@sha256:6de9ce15892da6d86c17af9895ab96ccdcc77c078e5ce22e9b296be3616f8a38 ...
section_end:1671617741:prepare_executor
section_start:1671617741:prepare_script
Preparing environment
Running on runner-2xm8djpt-project-2339-concurrent-1 via zavolan-ci.scicore.unibas.ch...
section_end:1671617742:prepare_script
section_start:1671617742:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Reinitialized existing Git repository in /builds/zavolan_group/tools/terminal-fragment-selector/.git/
Checking out c6b96e6b as main...
Removing .mypy_cache/
Removing terminal_fragment_selector.egg-info/

Skipping Git submodules setup
section_end:1671617742:get_sources
section_start:1671617742:step_script
Executing "step_script" stage of the job script
Using docker image sha256:abe91ea92d3a872c530d42e6b9f7410e531eb835399328e98ecf8949bb39dd66 for python:3.10-slim-buster with digest python@sha256:6de9ce15892da6d86c17af9895ab96ccdcc77c078e5ce22e9b296be3616f8a38 ...
$ pip install -r requirements.txt
Collecting argparse
  Downloading argparse-1.4.0-py2.py3-none-any.whl (23 kB)
Collecting biopython
  Downloading biopython-1.80-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB)
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Collecting numpy>=1.23.3
  Downloading numpy-1.24.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB)
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Collecting pandas>=1.4.4
  Downloading pandas-1.5.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.1/12.1 MB 116.5 MB/s eta 0:00:00
Collecting pytz>=2020.1
  Downloading pytz-2022.7-py2.py3-none-any.whl (499 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 499.4/499.4 kB 85.1 MB/s eta 0:00:00
Collecting python-dateutil>=2.8.1
  Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
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Collecting six>=1.5
  Downloading six-1.16.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: pytz, argparse, six, numpy, python-dateutil, biopython, pandas
Successfully installed argparse-1.4.0 biopython-1.80 numpy-1.24.0 pandas-1.5.2 python-dateutil-2.8.2 pytz-2022.7 six-1.16.0
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
$ pip install -r requirements_dev.txt
Collecting pytest
  Downloading pytest-7.2.0-py3-none-any.whl (316 kB)
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Collecting coverage
  Downloading coverage-7.0.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (215 kB)
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Collecting flake8
  Downloading flake8-6.0.0-py2.py3-none-any.whl (57 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.8/57.8 kB 19.0 MB/s eta 0:00:00
Collecting flake8-docstrings
  Downloading flake8_docstrings-1.6.0-py2.py3-none-any.whl (5.7 kB)
Collecting mypy
  Downloading mypy-0.991-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB)
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Collecting pylint
  Downloading pylint-2.15.9-py3-none-any.whl (509 kB)
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Collecting tomli>=1.0.0
  Downloading tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting attrs>=19.2.0
  Downloading attrs-22.2.0-py3-none-any.whl (60 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.0/60.0 kB 21.1 MB/s eta 0:00:00
Collecting iniconfig
  Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
Collecting pluggy<2.0,>=0.12
  Downloading pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
Collecting exceptiongroup>=1.0.0rc8
  Downloading exceptiongroup-1.0.4-py3-none-any.whl (14 kB)
Collecting packaging
  Downloading packaging-22.0-py3-none-any.whl (42 kB)
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Collecting pycodestyle<2.11.0,>=2.10.0
  Downloading pycodestyle-2.10.0-py2.py3-none-any.whl (41 kB)
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Collecting mccabe<0.8.0,>=0.7.0
  Downloading mccabe-0.7.0-py2.py3-none-any.whl (7.3 kB)
Collecting pyflakes<3.1.0,>=3.0.0
  Downloading pyflakes-3.0.1-py2.py3-none-any.whl (62 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.8/62.8 kB 23.5 MB/s eta 0:00:00
Collecting pydocstyle>=2.1
  Downloading pydocstyle-6.1.1-py3-none-any.whl (37 kB)
Collecting typing-extensions>=3.10
  Downloading typing_extensions-4.4.0-py3-none-any.whl (26 kB)
Collecting mypy-extensions>=0.4.3
  Downloading mypy_extensions-0.4.3-py2.py3-none-any.whl (4.5 kB)
Collecting astroid<=2.14.0-dev0,>=2.12.13
  Downloading astroid-2.12.13-py3-none-any.whl (264 kB)
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Collecting tomlkit>=0.10.1
  Downloading tomlkit-0.11.6-py3-none-any.whl (35 kB)
Collecting platformdirs>=2.2.0
  Downloading platformdirs-2.6.0-py3-none-any.whl (14 kB)
Collecting isort<6,>=4.2.5
  Downloading isort-5.11.3-py3-none-any.whl (117 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 117.5/117.5 kB 36.2 MB/s eta 0:00:00
Collecting dill>=0.2
  Downloading dill-0.3.6-py3-none-any.whl (110 kB)
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Collecting lazy-object-proxy>=1.4.0
  Downloading lazy-object-proxy-1.8.0.tar.gz (41 kB)
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  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting wrapt<2,>=1.11
  Downloading wrapt-1.14.1-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (77 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.9/77.9 kB 26.7 MB/s eta 0:00:00
Collecting snowballstemmer
  Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 23.8 MB/s eta 0:00:00
Building wheels for collected packages: lazy-object-proxy
  Building wheel for lazy-object-proxy (pyproject.toml): started
  Building wheel for lazy-object-proxy (pyproject.toml): finished with status 'done'
  Created wheel for lazy-object-proxy: filename=lazy_object_proxy-1.8.0-cp310-cp310-linux_x86_64.whl size=11289 sha256=c14aa140ba1d6936a5efe426054edcdfaa9e7f35bc4d167309d7987fde821a4a
  Stored in directory: /root/.cache/pip/wheels/0f/87/53/4a8ff2034f38ce1f3f2d993f3d05dada6fc36fadc7792ad6b1
Successfully built lazy-object-proxy
Installing collected packages: snowballstemmer, mypy-extensions, iniconfig, wrapt, typing-extensions, tomlkit, tomli, pyflakes, pydocstyle, pycodestyle, pluggy, platformdirs, packaging, mccabe, lazy-object-proxy, isort, exceptiongroup, dill, coverage, attrs, pytest, mypy, flake8, astroid, pylint, flake8-docstrings
Successfully installed astroid-2.12.13 attrs-22.2.0 coverage-7.0.0 dill-0.3.6 exceptiongroup-1.0.4 flake8-6.0.0 flake8-docstrings-1.6.0 iniconfig-1.1.1 isort-5.11.3 lazy-object-proxy-1.8.0 mccabe-0.7.0 mypy-0.991 mypy-extensions-0.4.3 packaging-22.0 platformdirs-2.6.0 pluggy-1.0.0 pycodestyle-2.10.0 pydocstyle-6.1.1 pyflakes-3.0.1 pylint-2.15.9 pytest-7.2.0 snowballstemmer-2.2.0 tomli-2.0.1 tomlkit-0.11.6 typing-extensions-4.4.0 wrapt-1.14.1
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
$ pip install -e .
Obtaining file:///builds/zavolan_group/tools/terminal-fragment-selector
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting argparse
  Using cached argparse-1.4.0-py2.py3-none-any.whl (23 kB)
Requirement already satisfied: biopython in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.80)
Requirement already satisfied: numpy>=1.23.3 in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.24.0)
Requirement already satisfied: pandas>=1.4.4 in /usr/local/lib/python3.10/site-packages (from terminal-fragment-selector==0.1.1) (1.5.2)
Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.10/site-packages (from pandas>=1.4.4->terminal-fragment-selector==0.1.1) (2022.7)
Requirement already satisfied: python-dateutil>=2.8.1 in /usr/local/lib/python3.10/site-packages (from pandas>=1.4.4->terminal-fragment-selector==0.1.1) (2.8.2)
Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/site-packages (from python-dateutil>=2.8.1->pandas>=1.4.4->terminal-fragment-selector==0.1.1) (1.16.0)
Installing collected packages: argparse, terminal-fragment-selector
  Running setup.py develop for terminal-fragment-selector
Successfully installed argparse-1.4.0 terminal-fragment-selector-0.1.1
WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv
$ flake8 --docstring-convention google term_frag_sel/ tests/
$ pylint term_frag_sel/ tests/

------------------------------------
Your code has been rated at 10.00/10

$ mypy term_frag_sel/
Success: no issues found in 4 source files
section_end:1671617768:step_script
section_start:1671617768:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1671617768:cleanup_file_variables
Job succeeded