From 32743a097d274ca8a8836765f6a5785a3c36f1a8 Mon Sep 17 00:00:00 2001
From: LauraU123 <laura.urbanska@stud.unibas.ch>
Date: Wed, 9 Nov 2022 10:48:56 +0100
Subject: [PATCH] fixed and renamed poisson sampling script
---
scripts/{sampletranscript.py => poisson_sampling.py} | 5 -----
1 file changed, 5 deletions(-)
rename scripts/{sampletranscript.py => poisson_sampling.py} (88%)
diff --git a/scripts/sampletranscript.py b/scripts/poisson_sampling.py
similarity index 88%
rename from scripts/sampletranscript.py
rename to scripts/poisson_sampling.py
index 1a36491..5ca481e 100644
--- a/scripts/sampletranscript.py
+++ b/scripts/poisson_sampling.py
@@ -18,7 +18,6 @@ def transcript_sampling(total_transcript, transcripts):
#read file containing representative transcript levels and id
transcript = pd.read_csv(transcripts)
- transcript = transcripts
levels = []
#poisson sampling for each gene, proportional to expression levels
@@ -36,7 +35,3 @@ def transcript_sampling(total_transcript, transcripts):
pd.DataFrame.to_csv(transcript_numbers, "representative_transcript_numbers.csv")
-'''
-This function writes keeps the representative transcripts from the original input file (gtf)
-and writes them to an output.
-'''
\ No newline at end of file
--
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