diff --git a/scripts/find_representative_transcripts.py b/scripts/find_representative_transcripts.py index f378f310362c8575b7ce9cbe6be5c7e48dab0117..ee0dbc62de1d64c33d49184d7310cde8509bbdb2 100644 --- a/scripts/find_representative_transcripts.py +++ b/scripts/find_representative_transcripts.py @@ -191,10 +191,13 @@ def gtf_file_writer (original_file, output_file): if type_ == 'gene': gene_id = find_in_attributs(attributes, 'gene_id') output.append(entry) - if type_ != 'gene': + else: transcript_id = find_in_attributs(attributes, 'transcript_id') - if rep_transcript_dict[gene_id] == transcript_id: - output.append(entry) + try: + if rep_transcript_dict[gene_id] == transcript_id: + output.append(entry) + except: + print("error") with open(output_file, 'w') as last_file: last_file.write(output)