From 504e04cc8d68348e74970d6e7a01d70e25c16d21 Mon Sep 17 00:00:00 2001
From: Hugo Gillet <hugo.gillet@stud.unibas.ch>
Date: Fri, 2 Dec 2022 11:07:01 +0000
Subject: [PATCH] Update representative.py
---
scripts/representative.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/scripts/representative.py b/scripts/representative.py
index c940686..a670ad6 100644
--- a/scripts/representative.py
+++ b/scripts/representative.py
@@ -11,7 +11,7 @@ support level for each gene of the input
-def import_gtfSelection_to_df(gtf_modified_file: str):
+def import_gtfSelection_to_df(gtf_modified_file: str) -> pd.DataFrame:
"""Import intermediate file from gtf and create a df
Args:
@@ -41,7 +41,7 @@ names = ["Gene_mixed", "Transcript", "Support_level", "Na1", "Na2"] )
-def representative_transcripts_inDict(df_gtfSelection: str) -> pd.DataFrame:
+def representative_transcripts_inDict(df_gtfSelection: pd.DataFrame) -> pd.DataFrame:
"""Return a dict containing for each gene transcripts
with highest confidence level
@@ -70,7 +70,7 @@ def representative_transcripts_inDict(df_gtfSelection: str) -> pd.DataFrame:
-def find_repr_by_SupportLevel(intermediate_file:str):
+def find_repr_by_SupportLevel(intermediate_file : str) -> dict[str,str]:
"""Combine functions import_gtfSelection_to_df()
and representative_transcripts_inDict()
--
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